ViewGene
Locus Name:
GeneID:
Location:

GeneID:3563
TrivialName: PA14_52050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52050
PAO1 Ortholog Locus:PA0944
Sequence Length:669
Protein Length:222
Start: 4618794
Stop: 4619462
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04333.1|AE004528_11 (AE004528) phosphoribosylaminoimidazole synthetase [Pseudomonas aeruginosa PAO1]
Identities = 220/222 (99%), Positives = 222/222 (100%)
Sequence:
ATGCCGAAACTCTGCAATGTCGTGGTGCTGATTTCCGGCTCCGGCAGCAACCTGCAGGCGCTGATCGACAGC
CTCCGGGAGGGCGCCACGCCGGCCCGGATCCGCGCGGTGATCTCCAACCGCGCGGACGCCTATGGCCTGGAA
CGCGCGCGCCAGGCCGGCATCCAGACCGAGGTGCTCGATCACAAGGCCTATGCCGATCGCGAAAGCTTCGAC
CAGGCCCTGGCACAACGGATCGATGCCCATGAACCGCACCTGGTGATCCTTGCCGGGTTCATGCGCATCCTC
AGCGCCGATTTCGTTCGCCATTACCAGGGGCGACTGCTGAATATCCATCCCTCGTTGCTGCCGCGCCACAAA
GGGCTGCATACCCATCAACGCGCCCTCGAAGCCGGCGACCGCGAGCACGGTTGCAGCGTGCACTTCGTGACG
GAGGAACTCGATGGGGGGCCACTGGTCGTACAGGCAGTAATCCCGGTAGAGTCGCAAGATACGCCGGAACGC
CTGGCCAGACGGGTTCACGAGGAAGAACACCGGATCTACCCGCTGGCCATGCGCTGGTTCGCCGAGGGCCGC
TTGCGCCTGGGCGAACAGGGCGCCCTGCTGGATGGCCAGGCCCTGCCTGCCACCGGCCATCAGATTCGCACC
AAGGAGATTCGCAATGCGTAA
Translation:
MPKLCNVVVLISGSGSNLQALIDSLREGATPARIRAVISNRADAYGLERARQAGIQTEVLDHKAYADRESFD
QALAQRIDAHEPHLVILAGFMRILSADFVRHYQGRLLNIHPSLLPRHKGLHTHQRALEAGDREHGCSVHFVT
EELDGGPLVVQAVIPVESQDTPERLARRVHEEEHRIYPLAMRWFAEGRLRLGEQGALLDGQALPATGHQIRT
KEIRNA*
AnnotationID:3571GeneID:3563
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 13:01:08
Gene Name:purN
Confidence Code:2
GeneProduct:phosphoribosylaminoimidazole synthetase
Cell Localization:()
Synonyms:PA0944
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:phosphoribosylformylglycinamidine cyclo-ligase 
Functional Category Confidence Code:5
COGs:COG0299, pfam00551
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
One carbon pool by folate; Purine metabolism 
Homology:






 
Structural Features:
COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN. Score: 291, 6e-80
pfam00551, Formyl_trans_N, Formyl transferase. Score: 209, 2e-55







   
Genomic Context:
PurM and PurN are encoded by adjacent genes, as in E. coli.






   
Comment:


















    ReferenceID:7129




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24271




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3563
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5683
                           PA0944_tr
                           translation of PA0944
                           222
                           99.09
                           99.99
                           0
                           1135.0
     

     
     
158208
                           gb|AAG04333.1|AE004528_11
                           (AE004528) phosphoribosylaminoimidazole synthetase [Pseudomonas aeruginosa PAO1]
                           222
                           99.09
                           99.99
                           0
                           1135.0
     

     
     
158210
                           gb|AAN67285.1|AE016355_3
                           (AE016780) phosphoribosylglycinamide formyltransferase [Pseudomonas putida KT2440]
                           223
                           73.99
                           82.06
                           7
                           839.0
     

     
     
158209
                           gb|AAO55219.1|
                           (AE016861) phosphoribosylglycinamide formyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           222
                           72.97
                           82.43
                           6
                           846.0
     

     
     
158211
                           gb|AAM84978.1|AE013744_1
                           (AE013744) phosphoribosylglycinamide formyltransferase 1 [Yersinia pestis KIM]
                           222
                           55.85
                           70.72
                           10
                           652.0
     

     






      

          
GC ORFID: 46565How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0944Glimmer Score: 

          
Start: 335113Stop: 334445

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0944 translation of PA0944Homolog Bit Score 441.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5926 (ORF: BLASTX 340.0), t_PA0944 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGAAACTCTGCAATGTCGTGGTGCTGATTTCCGGCTCCGGCAGCAACCTGCAGGCGCTGATCGACAGC 
CTCCGGGAGGGCGCCACGCCGGCCCGGATCCGCGCGGTGATCTCCAACCGCGCGGACGCCTATGGCCTGGAA 
CGCGCGCGCCAGGCCGGCATCCAGACCGAGGTGCTCGATCACAAGGCCTATGCCGATCGCGAAAGCTTCGAC 
CAGGCCCTGGCACAACGGATCGATGCCCATGAACCGCACCTGGTGATCCTTGCCGGGTTCATGCGCATCCTC 
AGCGCCGATTTCGTTCGCCATTACCAGGGGCGACTGCTGAATATCCATCCCTCGTTGCTGCCGCGCCACAAA 
GGGCTGCATACCCATCAACGCGCCCTCGAAGCCGGCGACCGCGAGCACGGTTGCAGCGTGCACTTCGTGACG 
GAGGAACTCGATGGGGGGCCACTGGTCGTACAGGCAGTAATCCCGGTAGAGTCGCAAGATACGCCGGAACGC 
CTGGCCAGACGGGTTCACGAGGAAGAACACCGGATCTACCCGCTGGCCATGCGCTGGTTCGCCGAGGGCCGC 
TTGCGCCTGGGCGAACAGGGCGCCCTGCTGGATGGCCAGGCCCTGCCTGCCACCGGCCATCAGATTCGCACC 
AAGGAGATTCGCAATGCGTAA