ViewGene
Locus Name:
GeneID:
Location:

GeneID:3561
TrivialName: PA14_03150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03150
PAO1 Ortholog Locus:PA0255
Sequence Length:687
Protein Length:228
Start: 276839
Stop: 276153
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03644.1|AE004463_9 (AE004463) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 228/228 (100%), Positives = 228/228 (100%)
Sequence:
ATGGTGGGTAGCAGCGCGCGGCGCCTTCGTTTGCGGCGAACGCGCGGGCGTGTCGGGCTCGGCCTGGTGGCC
GGGCTGTCGGTACTGGCAGGCATGACCGACGCCATCGGTTTCCTCGCCACCGGCGACTTCGTTTCCTTCATG
AGCGGCAACACCACGCGCCTGGCGGTATCGCTGGGCGAGGGCGACTTCGGCGGGCTGGTGCGGCTGAGCGTC
GCCCTGGCCAGTTTCGTCGTCGGCAACGCGCTGGGAGTGATACTGGCGCGCTTCAGCGGGCGCCGGGCGGCG
CCGATCCTGGTCTGCTGCGCGATGCTGCTGGCGTTGTCGGCGGTCTGGCCATTCGACTGGAACGTGCCGGCG
CTGGTCGCCGCGATCCTCGCCATGGGCATGCTCAACGCCGTGGTCGAGCAGGTCAACGGCCTGCCCATCGGC
CTGACCTACGTCACCGGCGCCCTCTCCCGCTTCGGCCGCGGCCTCGGCCGCTGGCTGCTGGGCGAGCGGCGC
AACGGCTGGCGGGTGCAACTGGTGCCCTGGAGCGGCATGTGCGTCGGCGCGGTGCTCGGCGCCCTACTGGAA
CAGCAACTGGGCCTCGCGGCGATGGCGGCGAGCGCAGCGCTGGCGGCTCTTCTCGCGTTGCTGGCACTGGTG
ATTCCGCGGCCATGGCAGATGGACTATATGGTGCGTTGA
Translation:
MVGSSARRLRLRRTRGRVGLGLVAGLSVLAGMTDAIGFLATGDFVSFMSGNTTRLAVSLGEGDFGGLVRLSV
ALASFVVGNALGVILARFSGRRAAPILVCCAMLLALSAVWPFDWNVPALVAAILAMGMLNAVVEQVNGLPIG
LTYVTGALSRFGRGLGRWLLGERRNGWRVQLVPWSGMCVGAVLGALLEQQLGLAAMAASAALAALLALLALV
IPRPWQMDYMVR*
AnnotationID:3569GeneID:3561
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:52
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0255
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3619
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56035.1| (AE016864) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 209

 Score =  285 bits (728), Expect = 2e-76
 Identities = 140/207 (67%), Positives = 171/207 (82%)








 
Structural Features:
COG3619, COG3619, Predicted membrane protein
CD-Length = 226 residues, 100.0% aligned
Score =  157 bits (399), Expect = 9e-40
Identities = 85/226 (37%), Positives = 118/226 (52%), Gaps = 10/226 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7125




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24267




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33612




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3561_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3561
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5681
                           PA0255_tr
                           translation of PA0255
                           228
                           99.99
                           99.99
                           0
                           1138.0
     

     
     
158199
                           gb|AAG03644.1|AE004463_9
                           (AE004463) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           228
                           99.99
                           99.99
                           0
                           1138.0
     

     
     
158200
                           gb|AAN68523.1|AE016484_5
                           (AE016784) membrane protein, putative [Pseudomonas putida KT2440]
                           233
                           69.09
                           77.68
                           5
                           788.0
     

     
     
158201
                           gb|AAO56035.1|
                           (AE016864) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           228
                           61.40
                           75.43
                           19
                           727.0
     

     
     
158203
                           gb|AAB87462.1|
                           (AF031940) hypothetical protein [Sinorhizobium meliloti]
                           232
                           49.56
                           64.22
                           11
                           507.0
     

     






      

          
GC ORFID: 46563How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0255Glimmer Score: 

          
Start: 6078180Stop: 6077494

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0255 translation of PA0255Homolog Bit Score 442.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene6991 (ORF: BLASTX 307.0), t_PA0255 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGGGTAGCAGCGCGCGGCGCCTTCGTTTGCGGCGAACGCGCGGGCGTGTCGGGCTCGGCCTGGTGGCC 
GGGCTGTCGGTACTGGCAGGCATGACCGACGCCATCGGTTTCCTCGCCACCGGCGACTTCGTTTCCTTCATG 
AGCGGCAACACCACGCGCCTGGCGGTATCGCTGGGCGAGGGCGACTTCGGCGGGCTGGTGCGGCTGAGCGTC 
GCCCTGGCCAGTTTCGTCGTCGGCAACGCGCTGGGAGTGATACTGGCGCGCTTCAGCGGGCGCCGGGCGGCG 
CCGATCCTGGTCTGCTGCGCGATGCTGCTGGCGTTGTCGGCGGTCTGGCCATTCGACTGGAACGTGCCGGCG 
CTGGTCGCCGCGATCCTCGCCATGGGCATGCTCAACGCCGTGGTCGAGCAGGTCAACGGCCTGCCCATCGGC 
CTGACCTACGTCACCGGCGCCCTCTCCCGCTTCGGCCGCGGCCTCGGCCGCTGGCTGCTGGGCGAGCGGCGC 
AACGGCTGGCGGGTGCAACTGGTGCCCTGGAGCGGCATGTGCGTCGGCGCGGTGCTCGGCGCCCTACTGGAA 
CAGCAACTGGGCCTCGCGGCGATGGCGGCGAGCGCAGCGCTGGCGGCTCTTCTCGCGTTGCTGGCACTGGTG 
ATTCCGCGGCCATGGCAGATGGACTATATGGTGCGTTGA