ViewGene
Locus Name:
GeneID:
Location:

GeneID:3559
TrivialName: PA14_09410
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09410
PAO1 Ortholog Locus:PA4216
Sequence Length:648
Protein Length:215
Start: 807503
Stop: 806856
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO42617.1| (AE004616) probable pyridoxamine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1]
Identities = 215/215 (100%), Positives = 215/215 (100%)
Sequence:
ATGATGGGCGTCAACGCGAACATTTCCGAGTCCCTCACCGGGACCATCGAAGCCCCTTTCCCGGAGTTCGAG
GCGCCGCCGGCGAACCCCATGGAGGTGCTGCGCAACTGGCTGGAACGCGCCCGCCGCTATGGCGTGCGCGAG
CCGCGGGCACTGGCCCTGGCCACGGTCGACGGGCAGGGCCGGCCGTCGACGCGGATCGTGGTGATCGCCGAA
CTCGGCGAGCGCGGGGTGGTGTTCGCCACCCACGCCGATAGCCAGAAGGGCCGCGAACTGGCGCAGAACCCC
TGGGCCTCGGGGGTGCTGTACTGGCGCGAGAGCAGCCAGCAGATCATCCTCAACGGCCGCGCCGAACGCCTG
CCCGACGAGCGCGCCGACGCCCAGTGGCTGAGCCGCCCGTACCAGACCCACCCGATGTCGATCGCCTCGCGG
CAGAGCGAAACCCTCGCCGACATCCACGCCCTGCGCGCCGAAGCCCGGCGCCTGGCGGAAACCGACGGCCCG
CTGCCGCGCCCACCGGGCTACTGCCTGTTCGAACTGTGCCTGGAGTCGGTGGAGTTCTGGGGCAACGGCACC
GAGCGGCTGCACGAGCGCCTGCGCTACGACCGCGACGAAGGAGGCTGGAAGCACCGCTACCTGCAACCGTGA
Translation:
MMGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAE
LGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASR
QSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP*
AnnotationID:3567GeneID:3559
AnnotatorUID: danlee
Modification Date/Time: 2006-03-16 14:02:02
Gene Name:phzG1
Confidence Code:1
GeneProduct:probable pyrodoxamine 5'-phosphate oxidase
Cell Localization:()
Synonyms:PA4216
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Phenazine biosynthesis.
Homology:
corresponds to PA4216 of PAO1 (NOT PA1905), based on sequence and genomic context.
Structural Features:






   
Genomic Context:
Operon phzA1B1C1D1E1F1G1






   
Comment:


















    ReferenceID:7121




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24263




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3559
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
158140
                           gb|AAO42617.1|
                           (AE004616) probable pyridoxamine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1]
                           215
                           99.99
                           99.99
                           0
                           1141.0
     

     
     
5677
                           PA1905_tr
                           translation of PA1905
                           215
                           99.53
                           99.99
                           0
                           1137.0
     

     
     
5678
                           PA4216_tr
                           translation of PA4216
                           215
                           99.53
                           99.53
                           1
                           1136.0
     

     
     
158141
                           gb|AAG07604.1|AE004838_8
                           (AE004838) probable pyridoxamine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1]
                           215
                           99.53
                           99.53
                           1
                           1136.0
     

     
     
158142
                           gb|AAC64493.2|
                           (AF005404) PhzG [Pseudomonas aeruginosa]
                           215
                           99.53
                           99.53
                           1
                           1136.0
     

     






      

          
GC ORFID: 46561How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1905Glimmer Score: 

          
Start: 4146434Stop: 4147081

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1905 translation of PA1905Homolog Bit Score 442.0

          
Other Homologs:  t_PA4216 (ORF: BLASTX 442.0), t_PA1905 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGGGCGTCAACGCGAACATTTCCGAGTCCCTCACCGGGACCATCGAAGCCCCTTTCCCGGAGTTCGAG 
GCGCCGCCGGCGAACCCCATGGAGGTGCTGCGCAACTGGCTGGAACGCGCCCGCCGCTATGGCGTGCGCGAG 
CCGCGGGCACTGGCCCTGGCCACGGTCGACGGGCAGGGCCGGCCGTCGACGCGGATCGTGGTGATCGCCGAA 
CTCGGCGAGCGCGGGGTGGTGTTCGCCACCCACGCCGATAGCCAGAAGGGCCGCGAACTGGCGCAGAACCCC 
TGGGCCTCGGGGGTGCTGTACTGGCGCGAGAGCAGCCAGCAGATCATCCTCAACGGCCGCGCCGAACGCCTG 
CCCGACGAGCGCGCCGACGCCCAGTGGCTGAGCCGCCCGTACCAGACCCACCCGATGTCGATCGCCTCGCGG 
CAGAGCGAAACCCTCGCCGACATCCACGCCCTGCGCGCCGAAGCCCGGCGCCTGGCGGAAACCGACGGCCCG 
CTGCCGCGCCCACCGGGCTACTGCCTGTTCGAACTGTGCCTGGAGTCGGTGGAGTTCTGGGGCAACGGCACC 
GAGCGGCTGCACGAGCGCCTGCGCTACGACCGCGACGAAGGAGGCTGGAAGCACCGCTACCTGCAACCGTGA