ViewGene
Locus Name:
GeneID:
Location:

GeneID:3558
TrivialName: PA14_11130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11130
PAO1 Ortholog Locus:PA4079
Sequence Length:690
Protein Length:229
Start: 968133
Stop: 967444
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07466.1|AE004824_1 (AE004824) probable dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 227/229 (99%), Positives = 227/229 (99%)
Sequence:
ATGCACAACGTTCTGATCGTCGGCGCCTCGCGCGGCATCGGCCTGGGACTGGCGGATGCCTTCCTGCAACGC
GGCGCACAGGTATTCGCCGTCGCCCGGCGACCGCAAGGCTCTCCCGGGCTGCAGGCACTGGCGGAGCGAGCC
GGGGAGCGCTTGCAAGCGGTGACCGGCGACCTCAACCAACGCGACTGCGCCGAACGCATCGGCGAGGCGCTG
GGCGAGCGGCGGATCGATCGCCTGATCGTCAACGCCGGCATCTACGGCCCGCAGCAACAGGATGTGGCGGAA
ATCGACGCCGAGCAGACCGCCCAGCTGTTCCTGACCAACGCCATCGCGCCGCTGCGCCTGGCCAGGGCACTG
TCCGGGCGGGTTAGCCGGGGTGGCGTGGTGGCGTTCATGAGTTCGCAGATGGCCAGCCTGGCGCTGGGCCTG
TCGGCCACAATGCCGCTCTACGGCGCCAGCAAGGCGGCGCTGAACAGCCTGGTACGCagcTGGGAGGGCGAG
TTCGAGGAGTTGCCGTTCAGCCTGTTGCTCCTGCATCCCGGCTGGGTGCGTACCGAAATGGGCGGCGACAGC
GCGCCGCTGAGCGTCGAGGAAAGCGCCGCCGGACTGGTCGCGGCGGTGGAGGATGCCGCGGGCGTGAATGCC
TGTCGCTTCGTCGATTATCGGAACCAGCCGCTGCCCTGGTGA
Translation:
MHNVLIVGASRGIGLGLADAFLQRGAQVFAVARRPQGSPGLQALAERAGERLQAVTGDLNQRDCAERIGEAL
GERRIDRLIVNAGIYGPQQQDVAEIDAEQTAQLFLTNAIAPLRLARALSGRVSRGGVVAFMSSQMASLALGL
SATMPLYGASKAALNSLVRSWEGEFEELPFSLLLLHPGWVRTEMGGDSAPLSVEESAAGLVAAVEDAAGVNA
CRFVDYRNQPLPW*
AnnotationID:3566GeneID:3558
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 07:07:04
Gene Name:
Confidence Code:3
GeneProduct:putative short chain dehydrogenase
Cell Localization:()
Synonyms:PA4079
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0300,pfam00106
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54308.1| (AE016858) oxidoreductase, short-chain dehydrogenase/reductase
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 241

 Score =  166 bits (421), Expect = 8e-41
 Identities = 96/226 (42%), Positives = 136/226 (60%), Gaps = 6/226 (2%)






 
Structural Features:
COG0300, DltE, Short-chain dehydrogenases of various substrate specificities
CD-Length = 265 residues,  80.0% aligned
Score =  100 bits (251), Expect = 1e-22
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 14/219 (6%)

pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues,  84.2% aligned
Score = 96.9 bits (241), Expect = 2e-21
Identities = 59/213 (27%), Positives = 88/213 (41%), Gaps = 9/213 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7119




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24261




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36826




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3558_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3558
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5676
                           PA4079_tr
                           translation of PA4079
                           229
                           99.12
                           99.12
                           0
                           1136.0
     

     
     
158138
                           gb|AAG07466.1|AE004824_1
                           (AE004824) probable dehydrogenase [Pseudomonas aeruginosa PAO1]
                           229
                           99.12
                           99.12
                           0
                           1136.0
     

     
     
158139
                           gb|AAO54308.1|
                           (AE016858) oxidoreductase, short-chain dehydrogenase/reductase family [Pseudomonas syringae pv. tomato str. DC3000]
                           246
                           39.02
                           55.28
                           22
                           426.0
     

     






      

          
GC ORFID: 46560How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4079Glimmer Score: 

          
Start: 3985804Stop: 3986493

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4079 translation of PA4079Homolog Bit Score 442.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3595 (ORF: BLASTX 158.0), t_PA4079 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAACGTTCTGATCGTCGGCGCCTCGCGCGGCATCGGCCTGGGACTGGCGGATGCCTTCCTGCAACGC 
GGCGCACAGGTATTCGCCGTCGCCCGGCGACCGCAAGGCTCTCCCGGGCTGCAGGCACTGGCGGAGCGAGCC 
GGGGAGCGCTTGCAAGCGGTGACCGGCGACCTCAACCAACGCGACTGCGCCGAACGCATCGGCGAGGCGCTG 
GGCGAGCGGCGGATCGATCGCCTGATCGTCAACGCCGGCATCTACGGCCCGCAGCAACAGGATGTGGCGGAA 
ATCGACGCCGAGCAGACCGCCCAGCTGTTCCTGACCAACGCCATCGCGCCGCTGCGCCTGGCCAGGGCACTG 
TCCGGGCGGGTTAGCCGGGGTGGCGTGGTGGCGTTCATGAGTTCGCAGATGGCCAGCCTGGCGCTGGGCCTG 
TCGGCCACAATGCCGCTCTACGGCGCCAGCAAGGCGGCGCTGAACAGCCTGGTACGCagcTGGGAGGGCGAG 
TTCGAGGAGTTGCCGTTCAGCCTGTTGCTCCTGCATCCCGGCTGGGTGCGTACCGAAATGGGCGGCGACAGC 
GCGCCGCTGAGCGTCGAGGAAAGCGCCGCCGGACTGGTCGCGGCGGTGGAGGATGCCGCGGGCGTGAATGCC 
TGTCGCTTCGTCGATTATCGGAACCAGCCGCTGCCCTGGTGA