ViewGene
Locus Name:
GeneID:
Location:

GeneID:3556
TrivialName: PA14_26230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26230
PAO1 Ortholog Locus:PA2924
Sequence Length:690
Protein Length:229
Start: 2289876
Stop: 2289187
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06312.1|AE004718_9 (AE004718) histidine transport system permease HisQ [Pseudomonas aeruginosa PAO1]
Identities = 228/229 (99%), Positives = 228/229 (99%)
Sequence:
ATGTTCCTCGACGGCTTCGGCCCGCAGATACTCGCCGGCACCCTGGTGACCCTGAAACTGGCGCTGGGCTCC
CTGCTCGGCGCCGTGCTCATCGGCCTCCTCGGCGCCAGCGCCAAGCTCGCCGCCAACCGCCCGCTGCGCGCC
CTGGCCAGCGGCTATACGACGCTGATCCGCAGCGTCCCCGACCTGGTCATCATGCTGTTGCTGTTCTTCAGC
CTGCAGATCCTCCTCAACCGCGTCACCGACGCCCTCGGCATCGCCCAGGTCGACATCGACCCGTTCGCCGCC
GGCTGCGTCACCCTGGCGTTCATCTATGGCGCCTACTTCACGGAAACCTTCCGCGGCGCCTTCCAGGCGGTA
CCGGCCGGCCAGGTCGAAGCCGCGCAAGCCTACGGCATGGGGCGCTGGCGAGTGTTCCGCCGGGTACTCCTG
CCGCAGATGCTGCGCTACGCCCTGCCGGGCATCGGCAACAACTGGCAGGTGCTGGTCAAGTCCACCGCGCTG
GTCTCGATCATCGGCCTCGGCGACCTGGTCAAGGCCACCCAGGACGCCGGCAAGGGCACCCTGCAGTTCTTC
CACTTCACCCTGGTCTGCGGGCTGATCTACCTGGCCATCACCGCAATCTCCAACGCCGCGCTGCTGTGGCTG
GAGCGGCGCAGCTCGCTGGGCGTCAGGAGGCCGCTGCCATGA
Translation:
MFLDGFGPQILAGTLVTLKLALGSLLGAVLIGLLGASAKLAANRPLRALASGYTTLIRSVPDLVIMLLLFFS
LQILLNRVTDALGIAQVDIDPFAAGCVTLAFIYGAYFTETFRGAFQAVPAGQVEAAQAYGMGRWRVFRRVLL
PQMLRYALPGIGNNWQVLVKSTALVSIIGLGDLVKATQDAGKGTLQFFHFTLVCGLIYLAITAISNAALLWL
ERRSSLGVRRPLP*
AnnotationID:3564GeneID:3556
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 09:09:48
Gene Name:hisQ
Confidence Code:2
GeneProduct:histidine transport system permease protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4215
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB36615.1| (AP002561) histidine transport system permease protein [Escherichia
           coli O157:H7]
          Length = 228

 Score =  288 bits (737), Expect = 2e-77
 Identities = 142/224 (63%), Positives = 178/224 (79%)

>gb|AAP17715.1| (AE016986) histidine transport system permease protein [Shigella
           flexneri 2a str. 2457T]
          Length = 228

 Score =  287 bits (735), Expect = 3e-77
 Identities = 142/224 (63%), Positives = 177/224 (79%)

>gb|AAL21254.1| (AE008805) histidine and lysine/arginine/ornithine transport system
           [Salmonella typhimurium LT2]
          Length = 228

 Score =  285 bits (729), Expect = 1e-76
 Identities = 144/224 (64%), Positives = 175/224 (78%)








 
Structural Features:
COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues, 100.0% aligned
Score =  270 bits (693), Expect = 8e-74
Identities = 128/230 (55%), Positives = 168/230 (73%), Gaps = 3/230 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7115




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24257




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36120




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3556_cdd.html


    		




 
URL:

















    ReferenceID:36417




  
Author/Investigator(s):
        Higgins CF, Haag PD, Nikaido K, Ardeshir F, Garcia G, Ames GF.





  
Title:
        Complete nucleotide sequence and identification of membrane components of the histidine transport operon of S. typhimurium.




  
PubMed:
        7050725


MedLine:
        




    
Source:
Nature. 1982 Aug 19;298(5876):723-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7050725









           
Homologs By Global Alignment 

           

       



     
Gene ID:3556
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5672
                           PA2924_tr
                           translation of PA2924
                           229
                           99.56
                           99.56
                           0
                           1137.0
     

     
     
157999
                           gb|AAG06312.1|AE004718_9
                           (AE004718) histidine transport system permease HisQ [Pseudomonas aeruginosa PAO1]
                           229
                           99.56
                           99.56
                           0
                           1137.0
     

     
     
158007
                           gb|AAQ58528.1|
                           (AE016912) histidine transport system permease protein [Chromobacterium violaceum ATCC 12472]
                           230
                           63.91
                           77.82
                           2
                           722.0
     

     
     
158012
                           gb|AAA75579.1|
                           (J01805) Q protein [Salmonella typhimurium]
                           230
                           63.04
                           76.52
                           3
                           722.0
     

     
     
158011
                           emb|CAD07585.1|
                           (AL627274) histidine transport system permease protein [Salmonella enterica subsp. enterica serovar Typhi]
                           230
                           63.04
                           76.52
                           3
                           722.0
     

     






      

          
GC ORFID: 46558How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2924Glimmer Score: 

          
Start: 2664049Stop: 2664738

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2924 translation of PA2924Homolog Bit Score 442.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6100 (ORF: BLASTX 271.0), psyr_15may02_Scaffold8_revised_gene7809 (ORF: BLASTX 212.0), t_PA0889 (ORF: BLASTX 197.0), t_PA5154 (ORF: BLASTX 184.0), psyr_15may02_Scaffold6_revised_gene6952 (ORF: BLASTX 182.0), t_PA2924 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCCTCGACGGCTTCGGCCCGCAGATACTCGCCGGCACCCTGGTGACCCTGAAACTGGCGCTGGGCTCC 
CTGCTCGGCGCCGTGCTCATCGGCCTCCTCGGCGCCAGCGCCAAGCTCGCCGCCAACCGCCCGCTGCGCGCC 
CTGGCCAGCGGCTATACGACGCTGATCCGCAGCGTCCCCGACCTGGTCATCATGCTGTTGCTGTTCTTCAGC 
CTGCAGATCCTCCTCAACCGCGTCACCGACGCCCTCGGCATCGCCCAGGTCGACATCGACCCGTTCGCCGCC 
GGCTGCGTCACCCTGGCGTTCATCTATGGCGCCTACTTCACGGAAACCTTCCGCGGCGCCTTCCAGGCGGTA 
CCGGCCGGCCAGGTCGAAGCCGCGCAAGCCTACGGCATGGGGCGCTGGCGAGTGTTCCGCCGGGTACTCCTG 
CCGCAGATGCTGCGCTACGCCCTGCCGGGCATCGGCAACAACTGGCAGGTGCTGGTCAAGTCCACCGCGCTG 
GTCTCGATCATCGGCCTCGGCGACCTGGTCAAGGCCACCCAGGACGCCGGCAAGGGCACCCTGCAGTTCTTC 
CACTTCACCCTGGTCTGCGGGCTGATCTACCTGGCCATCACCGCAATCTCCAACGCCGCGCTGCTGTGGCTG 
GAGCGGCGCAGCTCGCTGGGCGTCAGGAGGCCGCTGCCATGA