ViewGene
Locus Name:
GeneID:
Location:

GeneID:3555
TrivialName: PA14_32580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32580
PAO1 Ortholog Locus:PA2479
Sequence Length:681
Protein Length:226
Start: 2829631
Stop: 2828951
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05867.1|AE004675_8 (AE004675) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 226/226 (100%), Positives = 226/226 (100%)
Sequence:
ATGCATGTACTGCTCACCGAAGACGACGACCTGATCGCCAGCGGCATCGTCGCCGGCCTCAACGCCCAGGGC
CTGACCGTGGACCGGGTGGCCAGCGCCGCCGATACCCAGGCGCTGCTCCAGGTGGCGCGCTTCGACGTGCTG
GTCCTCGATCTCGGCCTGCCCGACGAGGACGGCCTGCGCCTGCTGCAACGCCTGCGCCAGCAGGGCGTCGAC
CTGCCGGTGCTGGTGCTGACCGCGCGCGACGCGGTGACCGACCGGGTCGCCGGGTTGCAGGCCGGCGCcGAc
gACTACCTGCTCAAGCCCTTCGACCTGCGCGAACTCGGCGCCCGCCTGCATACCTTGCAGCGGCGCTCCGCC
GGGCGCTGCGTCAACGTCATCGAACACGGTCGCCTCAGCTACGATCCGAGCACCCGCGAAACCTGGCTCGAC
GGTCGCCCCGTGGAGCTGTCGCGACGCGAACAGGCGCTGTTGCAGGCATTGCTCAACAACCGCGGGCGGATC
CTCAGCGGCGAGCAGCTCAAGGACAGCGTCTATGGCTTCGGCGACGAGGTCGAGAGCAACGCCCTCAACGTC
CACATCCATCACCTGCGGCGCAAGCTCGGCAACGCCATCGTGCAGACCGTGCGCGGCCTCGGCTACCGCCTC
GGGCCGGCGCGCGGCGACGGAGACGACGCATGA
Translation:
MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGLRLLQRLRQQGVD
LPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSAGRCVNVIEHGRLSYDPSTRETWLD
GRPVELSRREQALLQALLNNRGRILSGEQLKDSVYGFGDEVESNALNVHIHHLRRKLGNAIVQTVRGLGYRL
GPARGDGDDA*
AnnotationID:3563GeneID:3555
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 18:06:15
Gene Name:
Confidence Code:3
GeneProduct:probable two-component response regulator
Cell Localization:()
Synonyms:PA2479
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Signal transduction
mechanisms / Transcription]






   
Genomic Context:






   
Comment:


















    ReferenceID:7113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24255




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3555
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5668
                           PA2479_tr
                           translation of PA2479
                           226
                           99.99
                           99.99
                           0
                           1137.0
     

     
     
157865
                           gb|AAG05867.1|AE004675_8
                           (AE004675) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           226
                           99.99
                           99.99
                           0
                           1137.0
     

     
     
157867
                           gb|AAN69806.1|AE016619_4
                           (AE016789) DNA-binding response regulator [Pseudomonas putida KT2440]
                           227
                           78.41
                           85.90
                           1
                           885.0
     

     
     
157866
                           gb|AAF80268.1|AF155506_2
                           (AF155506) ArmR [Pseudomonas sp. JR1]
                           229
                           77.29
                           89.08
                           5
                           902.0
     

     
     
157868
                           gb|AAQ60305.1|
                           (AE016919) probable two-component response regulator [Chromobacterium violaceum ATCC 12472]
                           226
                           63.27
                           73.00
                           5
                           680.0
     

     






      

          
GC ORFID: 46557How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2479Glimmer Score: 

          
Start: 2124293Stop: 2124973

          
Length: 681


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2479 translation of PA2479Homolog Bit Score 442.0

          
Other Homologs:  t_PA4776 (ORF: BLASTX 230.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 199.0), t_PA0756 (ORF: BLASTX 172.0), psyr_15may02_Scaffold16_revised_gene2699 (ORF: BLASTX 160.0), psyr_15may02_Scaffold17_revised_gene2789 (ORF: BLASTX 159.0), t_PA2657 (ORF: BLASTX 152.0), t_PA2479 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATGTACTGCTCACCGAAGACGACGACCTGATCGCCAGCGGCATCGTCGCCGGCCTCAACGCCCAGGGC 
CTGACCGTGGACCGGGTGGCCAGCGCCGCCGATACCCAGGCGCTGCTCCAGGTGGCGCGCTTCGACGTGCTG 
GTCCTCGATCTCGGCCTGCCCGACGAGGACGGCCTGCGCCTGCTGCAACGCCTGCGCCAGCAGGGCGTCGAC 
CTGCCGGTGCTGGTGCTGACCGCGCGCGACGCGGTGACCGACCGGGTCGCCGGGTTGCAGGCCGGCGCcGAc 
gACTACCTGCTCAAGCCCTTCGACCTGCGCGAACTCGGCGCCCGCCTGCATACCTTGCAGCGGCGCTCCGCC 
GGGCGCTGCGTCAACGTCATCGAACACGGTCGCCTCAGCTACGATCCGAGCACCCGCGAAACCTGGCTCGAC 
GGTCGCCCCGTGGAGCTGTCGCGACGCGAACAGGCGCTGTTGCAGGCATTGCTCAACAACCGCGGGCGGATC 
CTCAGCGGCGAGCAGCTCAAGGACAGCGTCTATGGCTTCGGCGACGAGGTCGAGAGCAACGCCCTCAACGTC 
CACATCCATCACCTGCGGCGCAAGCTCGGCAACGCCATCGTGCAGACCGTGCGCGGCCTCGGCTACCGCCTC 
GGGCCGGCGCGCGGCGACGGAGACGACGCATGA