ViewGene

Locus Name:
GeneID:
Location:

GeneID:3554
TrivialName: PA14_37780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37780
PAO1 Ortholog Locus:PA2066
Sequence Length:639
Protein Length:212
Start: 3368436
Stop: 3369074
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05454.1|AE004633_5 (AE004633) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 212/212 (100%), Positives = 212/212 (100%)
Sequence:
ATGAGCCCGACCCTGCAAGATGCCCGGCTGCTCTGGGACTTCCTCGGCCAGGGCCGCTGCCATGTGCCCTGC
GAACTGCTGGTGGTATGCGGCTCCTACGACCTGCGGGTCTGCGACCACGCCTGCGAACTGCTCGAACGCGGC
CTCGCCGAACGCCTGCTGTTCACCGGCAACACCGGGCACTGGACGCGCCATCTCTGGGTCGAGCCGGAAGCC
GAGCTGTTCGCCCGCCACGCCAGGGCACGCGGGGTAAGCGACAGCCTCATCGTGATCGAGCCGCGGGCGACC
AACTTCGCCGAGAACATCGCCTTCGCCCGCGAGCTGTTCCCCGACCTGCGCCGCGCGACCTTCGTCACCAAG
CCCAACTCGATCCGCCGCGTGGCGCTGACCCTGCCGGTCCGCTGGCCGGGGCTGGAGGGACACGTGGATGCG
CCCGACTACGCATTTCCCGACGGCATCTCGAACCTGGTCGGCGTACTCGGGGTGATCGACGAGATGGTTGGC
GACCTCGACCGCATCATGCGTTACCCGGCGCTGGGCTTCCAGGTCGCCTGCCCGATCCCGGCGCAGGTCATG
GACGCCTGGGAACGCCTGGTGGCGCGGGGTTTCGACCGCCACCTGGTGAACCCGCCGCGCTGA
Translation:
MSPTLQDARLLWDFLGQGRCHVPCELLVVCGSYDLRVCDHACELLERGLAERLLFTGNTGHWTRHLWVEPEA
ELFARHARARGVSDSLIVIEPRATNFAENIAFARELFPDLRRATFVTKPNSIRRVALTLPVRWPGLEGHVDA
PDYAFPDGISNLVGVLGVIDEMVGDLDRIMRYPALGFQVACPIPAQVMDAWERLVARGFDRHLVNPPR*
AnnotationID:3562GeneID:3554
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2066
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7111
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24253
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3554

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5667 PA2066_tr translation of PA2066 212 99.99 99.99 0 1137.0
157862 gb|AAG05454.1|AE004633_5 (AE004633) hypothetical protein PA2066 [Pseudomonas aeruginosa PAO1] 212 99.99 99.99 0 1137.0
157863 gb|AAN31002.1|AE014498_7 (AE014498) conserved hypothetical protein [Brucella suis 1330] 218 40.82 56.88 13 378.0
157864 gb|AAL53197.1| (AE009634) hypothetical protein [Brucella melitensis 16M] 218 40.82 56.42 13 376.0
GC ORFID: 46556How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2066Glimmer Score:
Start: 1585477Stop: 1584839
Length: 639
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2066 translation of PA2066Homolog Bit Score 442.0
Other Homologs: t_PA2066 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCCGACCCTGCAAGATGCCCGGCTGCTCTGGGACTTCCTCGGCCAGGGCCGCTGCCATGTGCCCTGC
GAACTGCTGGTGGTATGCGGCTCCTACGACCTGCGGGTCTGCGACCACGCCTGCGAACTGCTCGAACGCGGC
CTCGCCGAACGCCTGCTGTTCACCGGCAACACCGGGCACTGGACGCGCCATCTCTGGGTCGAGCCGGAAGCC
GAGCTGTTCGCCCGCCACGCCAGGGCACGCGGGGTAAGCGACAGCCTCATCGTGATCGAGCCGCGGGCGACC
AACTTCGCCGAGAACATCGCCTTCGCCCGCGAGCTGTTCCCCGACCTGCGCCGCGCGACCTTCGTCACCAAG
CCCAACTCGATCCGCCGCGTGGCGCTGACCCTGCCGGTCCGCTGGCCGGGGCTGGAGGGACACGTGGATGCG
CCCGACTACGCATTTCCCGACGGCATCTCGAACCTGGTCGGCGTACTCGGGGTGATCGACGAGATGGTTGGC
GACCTCGACCGCATCATGCGTTACCCGGCGCTGGGCTTCCAGGTCGCCTGCCCGATCCCGGCGCAGGTCATG
GACGCCTGGGAACGCCTGGTGGCGCGGGGTTTCGACCGCCACCTGGTGAACCCGCCGCGCTGA