ViewGene

Locus Name:
GeneID:
Location:

GeneID:3553
TrivialName: PA14_37520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37520
PAO1 Ortholog Locus:PA2087
Sequence Length:657
Protein Length:218
Start: 3339954
Stop: 3339298
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05475.1|AE004636_6 (AE004636) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 215/218 (98%), Positives = 215/218 (98%)
Sequence:
ATGAGCGCCGTCGAACGCGATCCGGCGGTGCAGGCGACGCTCTGGCGACAGCGGGTGTTCGAGGTGCACGCG
GCGATGTCCGCCTACGTCGCCGAGCGCCATCGGCGCGAAGACCTGGGGGACTGGGTGGCGACCAGCGCGCGG
ATATTCGCCGATCTGCCGGCGACCGACGACCTGCGCGCCGAAGCCTGGCAGGCGGTGTTCTTCCGCGCCCAG
GCGCTGATCGAACAGTTCATCGTCGCGCGCCCGGCGGATTACCGGCTCGACGACTGGGCGCGCGCCACCGCG
CGGATCTATCGCGCGCTGGAACCGGCGGGACGGGGCGATCCGGCCAGCGCCGCCGACCGCCTGGCACGCCAG
GCCGCGCTCTACGGTTCGCGTTTCGAGGTGCAGGCCGAGGCTGGCGGGCGCGCGGTATTCCACAACCGTCAC
TGCGCGATCTGGGACTACCGCGAGCGCGCCCGCGCCCGAGGCGTGCCGATCACCCTGGAGTCGGCCTGCACC
TATTGCACCAAGCTGCTGTCGGCGTTCGTCGCCGCCAGCGATTGCCGCGCCGACTGGCGGCTCTACGAAGAG
CCGCAAGGCCACGGCTGCGTATGGACCATCACGGCGGACAGCCTCAACCAAGGAGCAGGCGTACATGAACGC
GATCATTGA
Translation:
MSAVERDPAVQATLWRQRVFEVHAAMSAYVAERHRREDLGDWVATSARIFADLPATDDLRAEAWQAVFFRAQ
ALIEQFIVARPADYRLDDWARATARIYRALEPAGRGDPASAADRLARQAALYGSRFEVQAEAGGRAVFHNRH
CAIWDYRERARARGVPITLESACTYCTKLLSAFVAASDCRADWRLYEEPQGHGCVWTITADSLNQGAGVHER
DH*
AnnotationID:3561GeneID:3553
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 07:07:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2087
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7109
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24251
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3553

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5666 PA2087_tr translation of PA2087 218 98.62 98.62 0 1137.0
157861 gb|AAG05475.1|AE004636_6 (AE004636) hypothetical protein PA2087 [Pseudomonas aeruginosa PAO1] 218 98.62 98.62 0 1137.0
GC ORFID: 46555How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2087Glimmer Score:
Start: 1613960Stop: 1614616
Length: 657
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2087 translation of PA2087Homolog Bit Score 442.0
Other Homologs: t_PA2087 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCCGTCGAACGCGATCCGGCGGTGCAGGCGACGCTCTGGCGACAGCGGGTGTTCGAGGTGCACGCG
GCGATGTCCGCCTACGTCGCCGAGCGCCATCGGCGCGAAGACCTGGGGGACTGGGTGGCGACCAGCGCGCGG
ATATTCGCCGATCTGCCGGCGACCGACGACCTGCGCGCCGAAGCCTGGCAGGCGGTGTTCTTCCGCGCCCAG
GCGCTGATCGAACAGTTCATCGTCGCGCGCCCGGCGGATTACCGGCTCGACGACTGGGCGCGCGCCACCGCG
CGGATCTATCGCGCGCTGGAACCGGCGGGACGGGGCGATCCGGCCAGCGCCGCCGACCGCCTGGCACGCCAG
GCCGCGCTCTACGGTTCGCGTTTCGAGGTGCAGGCCGAGGCTGGCGGGCGCGCGGTATTCCACAACCGTCAC
TGCGCGATCTGGGACTACCGCGAGCGCGCCCGCGCCCGAGGCGTGCCGATCACCCTGGAGTCGGCCTGCACC
TATTGCACCAAGCTGCTGTCGGCGTTCGTCGCCGCCAGCGATTGCCGCGCCGACTGGCGGCTCTACGAAGAG
CCGCAAGGCCACGGCTGCGTATGGACCATCACGGCGGACAGCCTCAACCAAGGAGCAGGCGTACATGAACGC
GATCATTGA