ViewGene
Locus Name:
GeneID:
Location:

GeneID:3552
TrivialName: PA14_07910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07910
PAO1 Ortholog Locus:PA0607
Sequence Length:675
Protein Length:224
Start: 682237
Stop: 682911
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03996.1|AE004497_3 (AE004497) ribulose-phosphate 3-epimerase [Pseudomonas aeruginosa PAO1]
Identities = 224/224 (100%), Positives = 224/224 (100%)
Sequence:
ATGCAACCCTTCGCCATCGCTCCGTCGATCCTTTCCGCCGATTTCGCCCGCCTGGGCGAGGACGTGGACAAG
GTGCTCGCCGCCGGTGCCGACATCGTTCACTTCGACGTGATGGACAACCACTACGTGCCGAACCTGACCATC
GGCCCGATGGTCTGCTCGGCGCTGCGCAAGTACGGCGTGAGCGCGCCGATCGACGTGCACCTGATGGTGTCC
CCGGTGGATCGCATCATCGGCGACTTCATCGAAGCTGGCGCCACCTACATCACCTTCCATCCGGAAGCTTCC
CAGCACATCGACCGTTCCCTGCAACTGATCCGCGACGGCGGTTGCAAGGCGGGCCTGGTGTTCAACCCGGCC
ACTCCGCTGGAGGTGCTGAAGTACGTGATGGACAAGGTCGACATGGTCCTGCTGATGAGCGTCAACCCCGGC
TTCGGCGGGCAGAAATTCATCCCCGGTACCCTCGACAAGTTGCGCGAGGCACGCGCCCTGATCGATGCCTCC
GGACGCGAGATCCGCCTGGAGATCGATGGCGGCGTCAACGTCAAGAACATCCGTGAGATCGCCGCGGCGGGC
GCCGATACCTTCGTCGCCGGCTCGGCCATCTTCAACGCCCCGGACTACGCCGAGGTCATCCGCGCCATGCAT
GCCGAACTGGCCCAGGCGCACCAGTAA
Translation:
MQPFAIAPSILSADFARLGEDVDKVLAAGADIVHFDVMDNHYVPNLTIGPMVCSALRKYGVSAPIDVHLMVS
PVDRIIGDFIEAGATYITFHPEASQHIDRSLQLIRDGGCKAGLVFNPATPLEVLKYVMDKVDMVLLMSVNPG
FGGQKFIPGTLDKLREARALIDASGREIRLEIDGGVNVKNIREIAAAGADTFVAGSAIFNAPDYAEVIRAMH
AELAQAHQ*
AnnotationID:3560GeneID:3552
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:10
Gene Name:rpe
Confidence Code:2
GeneProduct:ribulose-phosphate 3-epimerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0036,pfam00834
Secondary Functional Category(ies):energy metabolism
EC Number:5.1.3.1
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66045.1|AE016233_11 (AE016775) ribulose-phosphate 3-epimerase [Pseudomonas putida
           KT2440]
          Length = 255

 Score =  411 bits (1057), Expect = e-114
 Identities = 206/222 (92%), Positives = 214/222 (96%)

>gb|AAO54108.1| (AE016857) ribulose-phosphate 3-epimerase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 224

 Score =  403 bits (1036), Expect = e-112
 Identities = 200/220 (90%), Positives = 211/220 (95%)

>gb|AAM87482.1|AE013998_6 (AE013998) D-ribulose-5-phosphate 3-epimerase [Yersinia pestis KIM]
          Length = 229

 Score =  355 bits (912), Expect = 9e-98
 Identities = 175/222 (78%), Positives = 195/222 (87%)








 
Structural Features:
COG0036, Rpe, Pentose-5-phosphate-3-epimerase 
[Carbohydrate transport and metabolism]
CD-Length = 220 residues, 100.0% aligned
Score =  314 bits (806), Expect = 6e-87
Identities = 135/222 (60%), Positives = 169/222 (76%), Gaps = 2/222 (0%)

pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family. 
CD-Length = 201 residues,  99.5% aligned
Score =  294 bits (755), Expect = 4e-81
Identities = 124/201 (61%), Positives = 156/201 (77%), Gaps = 1/201 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7107




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24249




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33890




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3552_cdd.html


    		




 
URL:

















    ReferenceID:35263




  
Author/Investigator(s):
        Lyngstadaas A, Lobner-Olesen A, Grelland E, Boye E.





  
Title:
        The gene for 2-phosphoglycolate phosphatase (gph) in Escherichia coli is located in the same operon as dam and at least five other diverse genes.




  
PubMed:
        10572959


MedLine:
        




    
Source:
Biochim Biophys Acta. 1999 Oct 18;1472(1-2):376-84.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10572959

















    ReferenceID:35264




  
Author/Investigator(s):
        Sprenger GA.





  
Title:
        Genetics of pentose-phosphate pathway enzymes of Escherichia coli K-12.





  
PubMed:
        8572885


MedLine:
        




    
Source:
Arch Microbiol. 1995 Nov;164(5):324-30.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8572885









           
Homologs By Global Alignment 

           

       



     
Gene ID:3552
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5665
                           PA0607_tr
                           translation of PA0607
                           224
                           99.99
                           99.99
                           0
                           1140.0
     

     
     
157725
                           gb|AAG03996.1|AE004497_3
                           (AE004497) ribulose-phosphate 3-epimerase [Pseudomonas aeruginosa PAO1]
                           224
                           99.99
                           99.99
                           0
                           1140.0
     

     
     
157727
                           gb|AAO54108.1|
                           (AE016857) ribulose-phosphate 3-epimerase [Pseudomonas syringae pv. tomato str. DC3000]
                           224
                           89.28
                           94.64
                           0
                           1034.0
     

     
     
157726
                           gb|AAN66045.1|AE016233_11
                           (AE016775) ribulose-phosphate 3-epimerase [Pseudomonas putida KT2440]
                           255
                           80.78
                           83.92
                           31
                           1056.0
     

     
     
157729
                           emb|CAC89018.1|
                           (AJ414141) ribulose-phosphate 3-epimerase [Yersinia pestis CO92]
                           225
                           77.77
                           86.66
                           1
                           910.0
     

     






      

          
GC ORFID: 46554How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0607Glimmer Score: 

          
Start: 6483580Stop: 6484254

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0607 translation of PA0607Homolog Bit Score 443.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2139 (ORF: BLASTX 402.0), t_PA0607 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACCCTTCGCCATCGCTCCGTCGATCCTTTCCGCCGATTTCGCCCGCCTGGGCGAGGACGTGGACAAG 
GTGCTCGCCGCCGGTGCCGACATCGTTCACTTCGACGTGATGGACAACCACTACGTGCCGAACCTGACCATC 
GGCCCGATGGTCTGCTCGGCGCTGCGCAAGTACGGCGTGAGCGCGCCGATCGACGTGCACCTGATGGTGTCC 
CCGGTGGATCGCATCATCGGCGACTTCATCGAAGCTGGCGCCACCTACATCACCTTCCATCCGGAAGCTTCC 
CAGCACATCGACCGTTCCCTGCAACTGATCCGCGACGGCGGTTGCAAGGCGGGCCTGGTGTTCAACCCGGCC 
ACTCCGCTGGAGGTGCTGAAGTACGTGATGGACAAGGTCGACATGGTCCTGCTGATGAGCGTCAACCCCGGC 
TTCGGCGGGCAGAAATTCATCCCCGGTACCCTCGACAAGTTGCGCGAGGCACGCGCCCTGATCGATGCCTCC 
GGACGCGAGATCCGCCTGGAGATCGATGGCGGCGTCAACGTCAAGAACATCCGTGAGATCGCCGCGGCGGGC 
GCCGATACCTTCGTCGCCGGCTCGGCCATCTTCAACGCCCCGGACTACGCCGAGGTCATCCGCGCCATGCAT 
GCCGAACTGGCCCAGGCGCACCAGTAA