ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3550

TrivialName: PA14_22760

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_22760

PAO1 Ortholog Locus: PA3204

Sequence Length: 678

Protein Length: 225

Start: 1979366

Stop: 1978689

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06592.1|AE004744_7 (AE004744) probable two-component response regulator [Pseudomonas aeruginosa PAO1] Identities = 225/225 (100%), Positives = 225/225 (100%)

Sequence:

ATGAGCGAACTGCTGTTGATCGACGATGACCGGGAGCTCTGCGAGCTGCTCGGTACCTGGCTGGTCCAGGAA
GGTTTCTCCGTGCGTGCCAGCCACGACGGCGCCCAGGCCCGTCGCGCCCTCGCCGAGCAGACGCCGGATGCC
GTGGTGCTCGACGTGATGCTGCCGGACGGCAGCGGCCTGGAACTGCTCAAGCAACTGCGCGGCGACCATCCC
GACCTGCCGGTGCTGATGCTGTCCGCCCGCGGCGAGCCGCTGGACCGCATCCTCGGTCTGGAACTGGGCGCC
GACGACTACCTGGCCAAGCCCTGCGACCCGCGCGAACTCACCGCACGGCTGCGCGCCGTGCTGCGGCGAACC
CACCCGGCGCAGCCCAGCGCGCAGATGCAACTGGGCGACCTGTCGCTGAACCTGACGCGCGGCGTGGCGCAG
ATCGACGGCCAGGAGATCAGCCTGACCCTTTCCGAAAGCCGCATCCTCGAAGCGCTCCTGCGCCAGCCCGGC
GAGCCGCTGGACAAGCAGGCCCTGGCGCAACTGGCGCTGGGCCGCAAGCTGACCCTCTACGACCGCAGCCTG
GACATGCACGTCAGCAACCTGCGCAAGAAGCTCGGCAGCCACCCCGACGGCAGCCCGCGCATCCTCGCCCTG
CGCGGCCGCGGCTACTACTACAGCCACTGA

Translation:

MSELLLIDDDRELCELLGTWLVQEGFSVRASHDGAQARRALAEQTPDAVVLDVMLPDGSGLELLKQLRGDHP
DLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRTHPAQPSAQMQLGDLSLNLTRGVAQ
IDGQEISLTLSESRILEALLRQPGEPLDKQALAQLALGRKLTLYDRSLDMHVSNLRKKLGSHPDGSPRILAL
RGRGYYYSH*

AnnotationID:3558 GeneID:3550

AnnotatorUID: diggins

Modification Date/Time: 2005-04-14 07:07:44

Gene Name: cpxR

Confidence Code: 3

GeneProduct: putative transcriptional regulator in 2-component system

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (28) Two-component regulatory systems

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0745

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN70077.1|AE016647_7 (AE016790) DNA-binding response regulator [Pseudomonas putida
           KT2440]
          Length = 225

 Score =  366 bits (939), Expect = e-101
 Identities = 184/223 (82%), Positives = 199/223 (89%)

>gb|AAQ18123.1| (AY295086) CpxR [Legionella pneumophila]
          Length = 226

 Score =  212 bits (539), Expect = 2e-54
 Identities = 108/224 (48%), Positives = 153/224 (68%), Gaps = 2/224 (0%)

>gb|AAL22899.1| (AE008889) response reguator in two-component regulatory system
           with CpxA [Salmonella typhimurium LT2]
          Length = 232

 Score =  199 bits (505), Expect = 1e-50
 Identities = 110/228 (48%), Positives = 152/228 (66%), Gaps = 9/228 (3%)

Structural Features:

COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain 
and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues,  98.3% aligned
Score =  194 bits (493), Expect = 1e-50
Identities = 98/226 (43%), Positives = 136/226 (60%), Gaps = 5/226 (2%)

Genomic Context:

Comment:

ReferenceID:7103

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24245

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32340

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3550_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3550

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5660 PA3204_tr translation of PA3204 225 99.99 99.99 0 1139.0

157640 gb|AAG06592.1|AE004744_7 (AE004744) probable two-component response regulator [Pseudomonas aeruginosa PAO1] 225 99.99 99.99 0 1139.0

157641 gb|AAN70077.1|AE016647_7 (AE016790) DNA-binding response regulator [Pseudomonas putida KT2440] 225 81.77 88.44 0 935.0

157642 gb|AAO55326.1| (AE016862) DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] 225 80.44 88.88 0 935.0

157643 gb|AAQ18123.1| (AY295086) CpxR [Legionella pneumophila] 227 47.57 67.40 3 540.0

GC ORFID: `46552`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3204`	Glimmer Score:
Start: `2974565`	Stop: `2975242`
Length: `678`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3204 translation of PA3204`	Homolog Bit Score `443.0`
Other Homologs: psyr_15may02_Scaffold12_revised_gene2003 (ORF: BLASTX 361.0), psyr_15may02_Scaffold5_revised_gene6354 (ORF: BLASTX 168.0), t_PA4101 (ORF: BLASTX 159.0), psyr_15may02_Scaffold3_revised_gene4416 (ORF: BLASTX 157.0), t_PA0756 (ORF: BLASTX 136.0), t_PA3192 (ORF: BLASTX 116.0), t_PA5200 (ORF: BLASTX 111.0), t_PA1799 (ORF: BLASTX 109.0), t_PA5360 (ORF: BLASTX 108.0), psyr_15may02_Scaffold2_revised_gene3175 (ORF: BLASTX 107.0), psyr_15may02_Scaffold2_revised_gene2897 (ORF: BLASTX 107.0), t_PA1157 (ORF: BLASTX 106.0), psyr_15may02_Scaffold7_revised_gene7114 (ORF: BLASTX 105.0), t_PA3204 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGAACTGCTGTTGATCGACGATGACCGGGAGCTCTGCGAGCTGCTCGGTACCTGGCTGGTCCAGGAA GGTTTCTCCGTGCGTGCCAGCCACGACGGCGCCCAGGCCCGTCGCGCCCTCGCCGAGCAGACGCCGGATGCC GTGGTGCTCGACGTGATGCTGCCGGACGGCAGCGGCCTGGAACTGCTCAAGCAACTGCGCGGCGACCATCCC GACCTGCCGGTGCTGATGCTGTCCGCCCGCGGCGAGCCGCTGGACCGCATCCTCGGTCTGGAACTGGGCGCC GACGACTACCTGGCCAAGCCCTGCGACCCGCGCGAACTCACCGCACGGCTGCGCGCCGTGCTGCGGCGAACC CACCCGGCGCAGCCCAGCGCGCAGATGCAACTGGGCGACCTGTCGCTGAACCTGACGCGCGGCGTGGCGCAG ATCGACGGCCAGGAGATCAGCCTGACCCTTTCCGAAAGCCGCATCCTCGAAGCGCTCCTGCGCCAGCCCGGC GAGCCGCTGGACAAGCAGGCCCTGGCGCAACTGGCGCTGGGCCGCAAGCTGACCCTCTACGACCGCAGCCTG GACATGCACGTCAGCAACCTGCGCAAGAAGCTCGGCAGCCACCCCGACGGCAGCCCGCGCATCCTCGCCCTG CGCGGCCGCGGCTACTACTACAGCCACTGA