ViewGene
Locus Name:
GeneID:
Location:

GeneID:355
TrivialName: PA14_69170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69170
PAO1 Ortholog Locus:PA5238
Sequence Length:1989
Protein Length:662
Start: 6171007
Stop: 6169019
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08623.1|AE004936_6 (AE004936) probable O-antigen acetylase [Pseudomonas aeruginosa PAO1]
Identities = 653/662 (98%), Positives = 658/662 (99%)
Sequence:
ATGTCGAGCCTGCCTTATCGAAGAGATATCGATGGATTGCGCGCACTGGCCATCTTGTCGGTGGTGTTCTAT
CACTTGGGCTTGGGCGGTTTCACCGGCGGCTATGTCGGCGTCGATGTCTTTCTGGTGATTTCCGGCTACCTG
ATCACTTCGATCATCCGGCGCGATCGGCAGGCCGGGCGTTTCAGCTTCGTCGATTTCTGGGCTCGCCGGGCG
CGACGCATCCTCCCCGCTTTGTTCGTTATGATGGCCGTCAGCCTGGCGGCCGGCTGGTTCCTGATGGAGCCG
CGGGACTACGAGCAACTGGGTCGTGCGGTGCGTTACCAGACGATGTTCGCCTCGAACATCCTGTTCTGGAAG
CAGGATGGCTATTTCGACGCCGCGTCCGAATTCAAGCCGCTATTGCATACCTGGTCGTTGTCGGTGGAAGAG
CAGTTCTACATTCTCTTCCCTCTACTGCTGGCCGCGATCTCCGGGCGTCTGCTGCGCTGGCGGCTCGCCATC
CTCCTCGCGGTCCTGGCGCTATCGCTGGCGGCCAGCGTCTGGGCGGTGAACCAGCGACCTGGCAGTGCATTC
TTCCTCCTGCCGATGCGCGCCTGGGAACTCCTGGCGGGTGCCGCGCTGGCATTGCTGCCGGGCGGTAGCCGC
GGTCATTCGCAGTGGTCCCTGCAACTGGCGGCCACCCTCGGGATAGCGGCGATTCTCCTGCCGGTGTTCTTC
TACGACAGCGACACTCCCTTCCCCGGCCTCGCGGCGCTGCCGGCGGTGCTTGGCACCGCCCTGCTGATCTGG
GCCAACGGCGCCGGCGACACCTGGGTTCGCCGCCTGCTGGGCTGGCAACCGCTGGTCTGGTTCGGTCTGATC
TCCTATTCGCTGTACCTCTGGCACTGGCCACTGTACGTCTTCGTCCAGTACCACGCACTGGAAACCCTGGGC
CTGCCGGCACGTCTGGGGTTGCTGGCGGCGAGCATCGGCCTGGCGGCACTGTCGCTGTACTACGTCGAGGCA
CCGTTCCGCGAGCGCAAGCTGTTCGCCGGGCGCCGGCAGATGCTTGGCGCGGCGCTGTGCAGCTTGCTGCTG
CTGGGAGTCGTCGGCCAGTTGGTGCGGCATTACGACGGCGTGCCGTCGCGTCTTTCCGAGGAAGCCTTGCGT
TATGCCAAGGCGTCCAAATGGCGCGATGGGCAGACCGACTGCATGTTCGACAAGAAGGCGCTCAGTCAGGAA
AGCATCTGCCGCTTCCCGGCGGAACTGGCTGCCGAACGACCGCTGCTGGTCAGTTGGGGCGACAGCCATTCC
GCGGCGTTGAGCCCGCTGCTGCGCGAACTGGCTGCCAGTCGCCGACTGCCGATCTGGCAGGCTTCGCTGGCG
GGCTGTCCGCCGTTGCTGGGGATGTTGGAAAAGGACAATTGCCTGCGTTTCAATCAGCAGATGCTCGAGTTC
GTCGAACAGCAGCGGCCGGGCGGGGTGATCCTCGCCGGGCGCTGGGACATGTATGTCTACGGCGACTCGCAG
GACGGCACCCGCAACATTCTCCGCGAGCCGGACGACACGCCGGACAGCTCGATCGCCGAGGCGCTGCTGCGG
CAACGCCTGAGCGGGATGATCGAAAGGCTGAACGCGGCCGACGTACATGTCTGGCTGGTCAAGGACGTACCG
CTGCTGCCATTCAAGGCACCGGCGCGGCTGGTGCGGCTGAGTCTGAGCGGGGAGGATGTCGGGCGCGCACGT
TTTCCCTTCGCTGAGCACACTGCGCGCGTCGCCTACGTGAATGCGCTGTTCGATGCGCTGGCCGAAGGCAAC
CCGCGGGTGAGCGTGATCGACCCCTCCAGCGTGCTCTGCGATGGCCTGGATTGTTTCGCCGAACGTGATGGC
TGGTCGCTGTACATGGATAACAACCACCTTTCGACCCAGGGGGCCCATGAACTCGGGCCTTTGTTCGAGCCG
ATGCTACAGAGCCTCGACGACTCGCGGATCGCCAGCCAGCAGTGA
Translation:
MSSLPYRRDIDGLRALAILSVVFYHLGLGGFTGGYVGVDVFLVISGYLITSIIRRDRQAGRFSFVDFWARRA
RRILPALFVMMAVSLAAGWFLMEPRDYEQLGRAVRYQTMFASNILFWKQDGYFDAASEFKPLLHTWSLSVEE
QFYILFPLLLAAISGRLLRWRLAILLAVLALSLAASVWAVNQRPGSAFFLLPMRAWELLAGAALALLPGGSR
GHSQWSLQLAATLGIAAILLPVFFYDSDTPFPGLAALPAVLGTALLIWANGAGDTWVRRLLGWQPLVWFGLI
SYSLYLWHWPLYVFVQYHALETLGLPARLGLLAASIGLAALSLYYVEAPFRERKLFAGRRQMLGAALCSLLL
LGVVGQLVRHYDGVPSRLSEEALRYAKASKWRDGQTDCMFDKKALSQESICRFPAELAAERPLLVSWGDSHS
AALSPLLRELAASRRLPIWQASLAGCPPLLGMLEKDNCLRFNQQMLEFVEQQRPGGVILAGRWDMYVYGDSQ
DGTRNILREPDDTPDSSIAEALLRQRLSGMIERLNAADVHVWLVKDVPLLPFKAPARLVRLSLSGEDVGRAR
FPFAEHTARVAYVNALFDALAEGNPRVSVIDPSSVLCDGLDCFAERDGWSLYMDNNHLSTQGAHELGPLFEP
MLQSLDDSRIASQQ*
AnnotationID:364GeneID:355
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:44
Gene Name:
Confidence Code:3
GeneProduct:putative acyltransferase
Cell Localization:()
Synonyms:PA5238
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1835,pfam01757
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1835, COG1835, Predicted acyltransferases 
[Lipid metabolism]
CD-Length = 386 residues,  94.6% aligned
Score =  208 bits (529), Expect = 2e-54
Identities = 142/367 (38%), Positives = 174/367 (47%), Gaps = 15/367 (4%)

pfam01757, Acyl_transf_3, Acyltransferase family.
CD-Length = 327 residues, 100.0% aligned
Score =  161 bits (408), Expect = 3e-40
Identities = 108/344 (31%), Positives = 149/344 (43%), Gaps = 26/344 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:713




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17855




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34855




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:355_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:355
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
599
                           PA5238_tr
                           translation of PA5238
                           662
                           98.64
                           99.39
                           0
                           3397.0
     

     
     
28149
                           gb|AAG08623.1|AE004936_6
                           (AE004936) probable O-antigen acetylase [Pseudomonas aeruginosa PAO1]
                           662
                           98.64
                           99.39
                           0
                           3397.0
     

     
     
28150
                           dbj|BAC50205.1|
                           (AP005953) bll4940 [Bradyrhizobium japonicum USDA 110]
                           743
                           32.83
                           44.54
                           173
                           779.0
     

     
     
28151
                           emb|CAB85413.1|
                           (AL162758) putative inner membrane trans-acylase protein [Neisseria meningitidis Z2491]
                           708
                           31.92
                           47.03
                           132
                           657.0
     

     
     
28152
                           gb|AAM22599.1|AF390573_12
                           (AF390573) O-antigen acetylase [Vibrio cholerae O37]
                           677
                           12.11
                           15.80
                           518
                           401.0
     

     






      

          
GC ORFID: 43357How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5238Glimmer Score: 

          
Start: 5434694Stop: 5432706

          
Length: 1989


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5238 translation of PA5238Homolog Bit Score 1313.0

          
Other Homologs:  t_PA5238 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAGCCTGCCTTATCGAAGAGATATCGATGGATTGCGCGCACTGGCCATCTTGTCGGTGGTGTTCTAT 
CACTTGGGCTTGGGCGGTTTCACCGGCGGCTATGTCGGCGTCGATGTCTTTCTGGTGATTTCCGGCTACCTG 
ATCACTTCGATCATCCGGCGCGATCGGCAGGCCGGGCGTTTCAGCTTCGTCGATTTCTGGGCTCGCCGGGCG 
CGACGCATCCTCCCCGCTTTGTTCGTTATGATGGCCGTCAGCCTGGCGGCCGGCTGGTTCCTGATGGAGCCG 
CGGGACTACGAGCAACTGGGTCGTGCGGTGCGTTACCAGACGATGTTCGCCTCGAACATCCTGTTCTGGAAG 
CAGGATGGCTATTTCGACGCCGCGTCCGAATTCAAGCCGCTATTGCATACCTGGTCGTTGTCGGTGGAAGAG 
CAGTTCTACATTCTCTTCCCTCTACTGCTGGCCGCGATCTCCGGGCGTCTGCTGCGCTGGCGGCTCGCCATC 
CTCCTCGCGGTCCTGGCGCTATCGCTGGCGGCCAGCGTCTGGGCGGTGAACCAGCGACCTGGCAGTGCATTC 
TTCCTCCTGCCGATGCGCGCCTGGGAACTCCTGGCGGGTGCCGCGCTGGCATTGCTGCCGGGCGGTAGCCGC 
GGTCATTCGCAGTGGTCCCTGCAACTGGCGGCCACCCTCGGGATAGCGGCGATTCTCCTGCCGGTGTTCTTC 
TACGACAGCGACACTCCCTTCCCCGGCCTCGCGGCGCTGCCGGCGGTGCTTGGCACCGCCCTGCTGATCTGG 
GCCAACGGCGCCGGCGACACCTGGGTTCGCCGCCTGCTGGGCTGGCAACCGCTGGTCTGGTTCGGTCTGATC 
TCCTATTCGCTGTACCTCTGGCACTGGCCACTGTACGTCTTCGTCCAGTACCACGCACTGGAAACCCTGGGC 
CTGCCGGCACGTCTGGGGTTGCTGGCGGCGAGCATCGGCCTGGCGGCACTGTCGCTGTACTACGTCGAGGCA 
CCGTTCCGCGAGCGCAAGCTGTTCGCCGGGCGCCGGCAGATGCTTGGCGCGGCGCTGTGCAGCTTGCTGCTG 
CTGGGAGTCGTCGGCCAGTTGGTGCGGCATTACGACGGCGTGCCGTCGCGTCTTTCCGAGGAAGCCTTGCGT 
TATGCCAAGGCGTCCAAATGGCGCGATGGGCAGACCGACTGCATGTTCGACAAGAAGGCGCTCAGTCAGGAA 
AGCATCTGCCGCTTCCCGGCGGAACTGGCTGCCGAACGACCGCTGCTGGTCAGTTGGGGCGACAGCCATTCC 
GCGGCGTTGAGCCCGCTGCTGCGCGAACTGGCTGCCAGTCGCCGACTGCCGATCTGGCAGGCTTCGCTGGCG 
GGCTGTCCGCCGTTGCTGGGGATGTTGGAAAAGGACAATTGCCTGCGTTTCAATCAGCAGATGCTCGAGTTC 
GTCGAACAGCAGCGGCCGGGCGGGGTGATCCTCGCCGGGCGCTGGGACATGTATGTCTACGGCGACTCGCAG 
GACGGCACCCGCAACATTCTCCGCGAGCCGGACGACACGCCGGACAGCTCGATCGCCGAGGCGCTGCTGCGG 
CAACGCCTGAGCGGGATGATCGAAAGGCTGAACGCGGCCGACGTACATGTCTGGCTGGTCAAGGACGTACCG 
CTGCTGCCATTCAAGGCACCGGCGCGGCTGGTGCGGCTGAGTCTGAGCGGGGAGGATGTCGGGCGCGCACGT 
TTTCCCTTCGCTGAGCACACTGCGCGCGTCGCCTACGTGAATGCGCTGTTCGATGCGCTGGCCGAAGGCAAC 
CCGCGGGTGAGCGTGATCGACCCCTCCAGCGTGCTCTGCGATGGCCTGGATTGTTTCGCCGAACGTGATGGC 
TGGTCGCTGTACATGGATAACAACCACCTTTCGACCCAGGGGGCCCATGAACTCGGGCCTTTGTTCGAGCCG 
ATGCTACAGAGCCTCGACGACTCGCGGATCGCCAGCCAGCAGTGA