ViewGene
Locus Name:
GeneID:
Location:

GeneID:3549
TrivialName: PA14_48860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48860
PAO1 Ortholog Locus:PA1193
Sequence Length:672
Protein Length:223
Start: 4344210
Stop: 4343539
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04582.1|AE004549_9 (AE004549) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 219/223 (98%), Positives = 221/223 (99%)
Sequence:
ATGCGCGACTACGCCTGGATGTACGAATACTGCCTGAACCGCTTCGGCTCCAGGGAGGCGCTGGAAGCGCGC
CTGCCGCAGCCGAAGAGCGCCGCCGAGCTGTGCGCGCTGGGCGACGACCGCTACCTGTCGCTGATCAGCCTG
CGGATCTTCCGCGCCGGCCTCAAGCACAGCCTGGTGGACGCCAAGTGGCCAGCCTTCGAGGAAGTGTTCTTC
GGCTTCGATCCGCAGAAGGTCGTGCTCATGAGCGCCGAGCATCTCGAGCGGCTGATGCAGGACGCCCGCCTG
ATCCGCCACCTGGGCAAGCTCAAGAGCGTGCCGCGCAATGCGCAGATGGTGCTCGACCTGGCCCGCGAGCAT
GGCAGCTTCGGCAACTTCCTCGCGGATTGGCCGGAAACCGACATCGTCGGCCTGTGGAAGCTGCTGTCCAAG
CGCGGCAACCAGCTCGGCGGCTTGTCGGCGCCGCGTTTTCTGCGGATGGCCGGCAAGGACACCTTCATTCCC
AGCGAGGACATGGTCGCCGCGCTGAAGGCCCAGGAGATCATCGACAAACCGCCCACCAGCCTCAAGGACCTG
GCGGCCGTCCAGGGAGCCTTCAACCAGTGGCGCGAGGAGAGCGGCCGGCCGCTGTGCCAGCTGTCGGTGATG
CTGGCGCATACGGTCAATCACTGA
Translation:
MRDYAWMYEYCLNRFGSREALEARLPQPKSAAELCALGDDRYLSLISLRIFRAGLKHSLVDAKWPAFEEVFF
GFDPQKVVLMSAEHLERLMQDARLIRHLGKLKSVPRNAQMVLDLAREHGSFGNFLADWPETDIVGLWKLLSK
RGNQLGGLSAPRFLRMAGKDTFIPSEDMVAALKAQEIIDKPPTSLKDLAAVQGAFNQWREESGRPLCQLSVM
LAHTVNH*
AnnotationID:3557GeneID:3549
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 07:07:13
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1193
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7101




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24243




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37582




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3549_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3549
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5659
                           PA1193_tr
                           translation of PA1193
                           223
                           98.20
                           99.10
                           0
                           1139.0
     

     
     
157630
                           gb|AAG04582.1|AE004549_9
                           (AE004549) hypothetical protein PA1193 [Pseudomonas aeruginosa PAO1]
                           223
                           98.20
                           99.10
                           0
                           1139.0
     

     
     
157631
                           gb|AAN67263.1|AE016353_3
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           223
                           79.37
                           89.23
                           0
                           956.0
     

     
     
157632
                           gb|AAO55205.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           223
                           70.85
                           84.75
                           0
                           871.0
     

     
     
157633
                           emb|CAD84358.1|
                           (BX321857) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           237
                           49.36
                           70.04
                           14
                           625.0
     

     






      

          
GC ORFID: 46551How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1193Glimmer Score: 

          
Start: 609698Stop: 610369

          
Length: 672


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1193 translation of PA1193Homolog Bit Score 443.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5937 (ORF: BLASTX 340.0), t_PA1193 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGACTACGCCTGGATGTACGAATACTGCCTGAACCGCTTCGGCTCCAGGGAGGCGCTGGAAGCGCGC 
CTGCCGCAGCCGAAGAGCGCCGCCGAGCTGTGCGCGCTGGGCGACGACCGCTACCTGTCGCTGATCAGCCTG 
CGGATCTTCCGCGCCGGCCTCAAGCACAGCCTGGTGGACGCCAAGTGGCCAGCCTTCGAGGAAGTGTTCTTC 
GGCTTCGATCCGCAGAAGGTCGTGCTCATGAGCGCCGAGCATCTCGAGCGGCTGATGCAGGACGCCCGCCTG 
ATCCGCCACCTGGGCAAGCTCAAGAGCGTGCCGCGCAATGCGCAGATGGTGCTCGACCTGGCCCGCGAGCAT 
GGCAGCTTCGGCAACTTCCTCGCGGATTGGCCGGAAACCGACATCGTCGGCCTGTGGAAGCTGCTGTCCAAG 
CGCGGCAACCAGCTCGGCGGCTTGTCGGCGCCGCGTTTTCTGCGGATGGCCGGCAAGGACACCTTCATTCCC 
AGCGAGGACATGGTCGCCGCGCTGAAGGCCCAGGAGATCATCGACAAACCGCCCACCAGCCTCAAGGACCTG 
GCGGCCGTCCAGGGAGCCTTCAACCAGTGGCGCGAGGAGAGCGGCCGGCCGCTGTGCCAGCTGTCGGTGATG 
CTGGCGCATACGGTCAATCACTGA