ViewGene

Locus Name:
GeneID:
Location:

GeneID:3547
TrivialName: PA14_71190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71190
PAO1 Ortholog Locus:PA5391
Sequence Length:675
Protein Length:224
Start: 6342748
Stop: 6342074
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08776.1|AE004951_10 (AE004951) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 223/224 (99%), Positives = 223/224 (99%)
Sequence:
ATGACCTTTTCCATCGTCGGCCGCTGCGCCGAAACCGGCCAGTTGGGCATCGCCATCAGCTCGTCGAGCATC
GCCGTCGGCGCCCGTTGTCCCTGGCTGCGCGCCGGCACCGGCGCGGTGGCTACGCAGAACATCACCCTGCCG
GCGCTCGGCCCGCAGATCCTCGACCGCCTCGACCAGGGCCTGGCCCCTGGCGAAGCGCTGGACCAGGCGCTG
AGCAGCAACGGCTATGGCCAGTATCGCCAGGTCACGGTGATCGACCAGCACGGCCGCACCGCGTTGTTCACC
GGCCGCGAGGCGCTCGGCGTCCACCATGCGCGGGCCGGCGAACAATGCGTGGCGGCCGGCAACCTGCTGGCC
GCGCCGGAAGTGATCGAGGCGATGGTGGATGCCTTCGAGAACGCCGAAGGCCTGCTCGCCGAGCGCCTGCTG
GCGGCGATGGGGGCCGCGCTGGCCGCTGGTGGCGAAGCCGGGCCGGTGCATTCGGCGGCGCTGTCGGTGGTC
GGCGACCTGCTCTGGCCGGTGGTCGACCTGCGCGTCGACTGGGCCGAGCACGACCCCATCGGCCAGCTCGAG
CGACTGTGGCTCGCCTACAAGCCGCAGATGCAGGACTATGTGACCCGCGCCCTCGACCCGACCCGTGCGCCG
AGCTACGGCGTGCCCGGCGACGAGTGA
Translation:
MTFSIVGRCAETGQLGIAISSSSIAVGARCPWLRAGTGAVATQNITLPALGPQILDRLDQGLAPGEALDQAL
SSNGYGQYRQVTVIDQHGRTALFTGREALGVHHARAGEQCVAAGNLLAAPEVIEAMVDAFENAEGLLAERLL
AAMGAALAAGGEAGPVHSAALSVVGDLLWPVVDLRVDWAEHDPIGQLERLWLAYKPQMQDYVTRALDPTRAP
SYGVPGDE*
AnnotationID:3555GeneID:3547
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5391
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7097
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24239
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34705
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3547_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3547

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5658 PA5391_tr translation of PA5391 224 99.55 99.55 0 1143.0
157624 gb|AAG08776.1|AE004951_10 (AE004951) hypothetical protein PA5391 [Pseudomonas aeruginosa PAO1] 224 99.55 99.55 0 1143.0
157625 gb|AAN69173.1|AE016551_4 (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440] 225 77.33 87.11 1 906.0
157626 emb|CAE35155.1| (BX640451) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 224 68.30 79.01 0 787.0
157627 emb|CAE44982.1| (BX640412) conserved hypothetical protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 224 68.30 79.01 0 787.0
GC ORFID: 46549How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5391Glimmer Score:
Start: 5606437Stop: 5605763
Length: 675
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5391 translation of PA5391Homolog Bit Score 444.0
Other Homologs: t_PA5391 (ORF: GLIMMER)
GC ORF Sequence
ATGACCTTTTCCATCGTCGGCCGCTGCGCCGAAACCGGCCAGTTGGGCATCGCCATCAGCTCGTCGAGCATC
GCCGTCGGCGCCCGTTGTCCCTGGCTGCGCGCCGGCACCGGCGCGGTGGCTACGCAGAACATCACCCTGCCG
GCGCTCGGCCCGCAGATCCTCGACCGCCTCGACCAGGGCCTGGCCCCTGGCGAAGCGCTGGACCAGGCGCTG
AGCAGCAACGGCTATGGCCAGTATCGCCAGGTCACGGTGATCGACCAGCACGGCCGCACCGCGTTGTTCACC
GGCCGCGAGGCGCTCGGCGTCCACCATGCGCGGGCCGGCGAACAATGCGTGGCGGCCGGCAACCTGCTGGCC
GCGCCGGAAGTGATCGAGGCGATGGTGGATGCCTTCGAGAACGCCGAAGGCCTGCTCGCCGAGCGCCTGCTG
GCGGCGATGGGGGCCGCGCTGGCCGCTGGTGGCGAAGCCGGGCCGGTGCATTCGGCGGCGCTGTCGGTGGTC
GGCGACCTGCTCTGGCCGGTGGTCGACCTGCGCGTCGACTGGGCCGAGCACGACCCCATCGGCCAGCTCGAG
CGACTGTGGCTCGCCTACAAGCCGCAGATGCAGGACTATGTGACCCGCGCCCTCGACCCGACCCGTGCGCCG
AGCTACGGCGTGCCCGGCGACGAGTGA