ViewGene

Locus Name:
GeneID:
Location:

GeneID:3546
TrivialName: PA14_11720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11720
PAO1 Ortholog Locus:PA4029
Sequence Length:666
Protein Length:221
Start: 1015277
Stop: 1014612
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07416.1|AE004820_1 (AE004820) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 221/221 (100%), Positives = 221/221 (100%)
Sequence:
ATGGACTTCAACCCAATCGATCTGATTCTCCACCTGGATACCTACCTGGCCATGCTGGTCAGCAACTATGGC
GTCTGGATCTACGCCATCCTGTTCCTGGTGATCTTCTGTGAAACCGGCCTGGTGGTGACTCCGTTCCTCCCC
GGCGACTCGCTGCTGTTCATCGCCGGCGCCATCTGCGCCACCGGCGGCATGGACCCATGGCTGCTCGGCGGG
CTGCTGATGGTCGCGGCGATCACCGGCGACAGCACCAACTACGTGATCGGCCGGACCCTCGGCAAGCGGCTG
TTCAGCAACCCCGACTCGAAGGTTTTCCGCCGCGACTACCTCGACCGCACCCATGAGTTCTACGAACGCCAC
GGCGGCAAGACCGTGACCCTGGCGCGCTTCCTGCCCATCGTGCGGACCTTCGCGCCCTTCGTCGCCGGCATG
GCGAAGATGCACTACCCGCGCTTCGTCATGTTCAGCGTGGTCGGCACCGTGGCCTGGGTCGGCGGCCTGGTG
ACCCTGGGCTACTTCTTCGGCAACGTGCCGTTCATCAAGAAGAACCTGTCGCTGCTGGTGATCGGCATCATC
CTGCTGTCGCTGCTGCCGATGATCCTCGGCTTCATTCGCCATCGCCTGCAGGCGAGCGCCGCCAAACAGGCC
AAGGCCCAGAGCGACTGA
Translation:
MDFNPIDLILHLDTYLAMLVSNYGVWIYAILFLVIFCETGLVVTPFLPGDSLLFIAGAICATGGMDPWLLGG
LLMVAAITGDSTNYVIGRTLGKRLFSNPDSKVFRRDYLDRTHEFYERHGGKTVTLARFLPIVRTFAPFVAGM
AKMHYPRFVMFSVVGTVAWVGGLVTLGYFFGNVPFIKKNLSLLVIGIILLSLLPMILGFIRHRLQASAAKQA
KAQSD*
AnnotationID:3554GeneID:3546
AnnotatorUID: urbach
Modification Date/Time: 2004-09-29 15:03:19
Gene Name:
Confidence Code:3
GeneProduct:probable membrane protein
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0586,pfam00597
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|10456 COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]
Length = 208
Score =  160 bits (406), Expect = 2e-40
Identities = 73/208 (35%), Positives = 119/208 (57%), Gaps = 1/208 (0%)
Genomic Context:
Comment:
ReferenceID:7095
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24237
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3546

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5657 PA4029_tr translation of PA4029 221 99.99 99.99 0 1143.0
157574 gb|AAG07416.1|AE004820_1 (AE004820) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 221 99.99 99.99 0 1143.0
157575 gb|AAN66167.1|AE016244_8 (AE016776) DedA family protein [Pseudomonas putida KT2440] 221 76.92 87.33 6 899.0
157576 gb|AAO54266.1| (AE016858) DedA family protein [Pseudomonas syringae pv. tomato str. DC3000] 221 71.94 85.97 6 853.0
157578 gb|AAQ59018.1| (AE016914) DedA protein family [Chromobacterium violaceum ATCC 12472] 224 57.58 73.21 13 686.0
GC ORFID: 46548How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4029Glimmer Score:
Start: 3938660Stop: 3939325
Length: 666
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4029 translation of PA4029Homolog Bit Score 444.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3627 (ORF: BLASTX 330.0), t_PA4029 (ORF: GLIMMER)
GC ORF Sequence
ATGGACTTCAACCCAATCGATCTGATTCTCCACCTGGATACCTACCTGGCCATGCTGGTCAGCAACTATGGC
GTCTGGATCTACGCCATCCTGTTCCTGGTGATCTTCTGTGAAACCGGCCTGGTGGTGACTCCGTTCCTCCCC
GGCGACTCGCTGCTGTTCATCGCCGGCGCCATCTGCGCCACCGGCGGCATGGACCCATGGCTGCTCGGCGGG
CTGCTGATGGTCGCGGCGATCACCGGCGACAGCACCAACTACGTGATCGGCCGGACCCTCGGCAAGCGGCTG
TTCAGCAACCCCGACTCGAAGGTTTTCCGCCGCGACTACCTCGACCGCACCCATGAGTTCTACGAACGCCAC
GGCGGCAAGACCGTGACCCTGGCGCGCTTCCTGCCCATCGTGCGGACCTTCGCGCCCTTCGTCGCCGGCATG
GCGAAGATGCACTACCCGCGCTTCGTCATGTTCAGCGTGGTCGGCACCGTGGCCTGGGTCGGCGGCCTGGTG
ACCCTGGGCTACTTCTTCGGCAACGTGCCGTTCATCAAGAAGAACCTGTCGCTGCTGGTGATCGGCATCATC
CTGCTGTCGCTGCTGCCGATGATCCTCGGCTTCATTCGCCATCGCCTGCAGGCGAGCGCCGCCAAACAGGCC
AAGGCCCAGAGCGACTGA