ViewGene
Locus Name:
GeneID:
Location:

GeneID:3544
TrivialName: PA14_43530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43530
PAO1 Ortholog Locus:PA1623
Sequence Length:663
Protein Length:220
Start: 3877214
Stop: 3876552
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05012.1|AE004590_3 (AE004590) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 219/220 (99%), Positives = 219/220 (99%)
Sequence:
ATGATCGATCTCTACACCGCCGCCACGCCGAACGGCCACAAGGTTTCCATCGCCCTCGAGGAAATGGGCCTG
CCCTACAGGGTGCACGCGCTGTCGTTCGACAAGAAGGAGCAGAAGGCTCCGGAATTCCTCAGGATCAATCCC
AACGGCCGCATCCCGGCCATCGTCGACCGCGACAACGACGACTTCGCCGTCTTCGAGTCGGGCGCGATCCTC
ATCTACCTCGCCGAGAAGACCGGGCAACTGATGCCCGCCGACGTCAAGGGTCGCTCGCGGGTGATCCAGTGG
CTGATGTTCCAGATGGGTGGGGTCGGCCCGATGCAGGGGCAGGCCAACGTGTTCTTCCGTTATTTCCCGGAG
AAGTTGCAGGGCGCCATCGACCGCTACCAGCATGAGACCCGGCGCCTCTACGAAGTTCTCGACGGTCGCCTG
GGCGAGGCCGAGTACCTCGCCGGCGACTACAGCATTGCCGATATCGCCACCTATCCCTGGGTGCGCATCCAC
GACTGGTCCGGTGTCGCCGTCGACGGGCTGGACAACCTGCAACGCTGGATCGCCGCCATCGAGGCGCGTCCC
GCGGTGCAGCGCGGACTGCTGGTGCCGCGGCGGGAGAAGGAGGGCGACGACGCCATCCGTACCGCCCAGTCG
ATGCTGACCCGTTGA
Translation:
MIDLYTAATPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDRDNDDFAVFESGAIL
IYLAEKTGQLMPADVKGRSRVIQWLMFQMGGVGPMQGQANVFFRYFPEKLQGAIDRYQHETRRLYEVLDGRL
GEAEYLAGDYSIADIATYPWVRIHDWSGVAVDGLDNLQRWIAAIEARPAVQRGLLVPRREKEGDDAIRTAQS
MLTR*
AnnotationID:3552GeneID:3544
AnnotatorUID: diggins
Modification Date/Time: 2005-05-30 15:03:40
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:PA1623
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:2.5.1.18
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAF96486.1| (AE004389) glutathione S-transferase, putative [Vibrio cholerae]
          Length = 222

 Score =  312 bits (800), Expect = 8e-85
 Identities = 151/222 (68%), Positives = 180/222 (81%), Gaps = 2/222 (0%)

>gb|AAN54633.1|AE015603_7 (AE015603) glutathione S-transferase family protein [Shewanella
           oneidensis MR-1]
          Length = 222

 Score =  306 bits (784), Expect = 6e-83
 Identities = 146/202 (72%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

>gb|AAN50554.1|AE011495_3 (AE011495) glutathione S-transferase [Leptospira interrogans
           serovar lai str. 56601]
          Length = 224

 Score =  279 bits (713), Expect = 1e-74
 Identities = 135/224 (60%), Positives = 175/224 (78%), Gaps = 4/224 (1%)








 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  94.8% aligned
Score =  149 bits (376), Expect = 3e-37
Identities = 75/203 (36%), Positives = 109/203 (53%), Gaps = 10/203 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7091




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24233




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37265




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3544_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3544
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5653
                           PA1623_tr
                           translation of PA1623
                           220
                           99.54
                           99.54
                           0
                           1142.0
     

     
     
157517
                           gb|AAG05012.1|AE004590_3
                           (AE004590) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           220
                           99.54
                           99.54
                           0
                           1142.0
     

     
     
157518
                           gb|AAF96486.1|
                           (AE004389) glutathione S-transferase, putative [Vibrio cholerae O1 biovar eltor str. N16961]
                           222
                           68.01
                           81.08
                           2
                           804.0
     

     
     
157519
                           gb|AAN54633.1|AE015603_7
                           (AE015603) glutathione S-transferase family protein [Shewanella oneidensis MR-1]
                           222
                           67.11
                           80.18
                           2
                           788.0
     

     
     
157520
                           gb|AAN50554.1|AE011495_3
                           (AE011495) glutathione S-transferase [Leptospira interrogans serovar lai str. 56601]
                           224
                           60.26
                           78.12
                           4
                           718.0
     

     






      

          
GC ORFID: 46546How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1623Glimmer Score: 

          
Start: 1076695Stop: 1077357

          
Length: 663


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1623 translation of PA1623Homolog Bit Score 444.0

          
Other Homologs:  t_PA1033 (ORF: BLASTX 213.0), t_PA1185 (ORF: BLASTX 161.0), psyr_15may02_Scaffold2_revised_gene3636 (ORF: BLASTX 157.0), t_PA1623 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGATCTCTACACCGCCGCCACGCCGAACGGCCACAAGGTTTCCATCGCCCTCGAGGAAATGGGCCTG 
CCCTACAGGGTGCACGCGCTGTCGTTCGACAAGAAGGAGCAGAAGGCTCCGGAATTCCTCAGGATCAATCCC 
AACGGCCGCATCCCGGCCATCGTCGACCGCGACAACGACGACTTCGCCGTCTTCGAGTCGGGCGCGATCCTC 
ATCTACCTCGCCGAGAAGACCGGGCAACTGATGCCCGCCGACGTCAAGGGTCGCTCGCGGGTGATCCAGTGG 
CTGATGTTCCAGATGGGTGGGGTCGGCCCGATGCAGGGGCAGGCCAACGTGTTCTTCCGTTATTTCCCGGAG 
AAGTTGCAGGGCGCCATCGACCGCTACCAGCATGAGACCCGGCGCCTCTACGAAGTTCTCGACGGTCGCCTG 
GGCGAGGCCGAGTACCTCGCCGGCGACTACAGCATTGCCGATATCGCCACCTATCCCTGGGTGCGCATCCAC 
GACTGGTCCGGTGTCGCCGTCGACGGGCTGGACAACCTGCAACGCTGGATCGCCGCCATCGAGGCGCGTCCC 
GCGGTGCAGCGCGGACTGCTGGTGCCGCGGCGGGAGAAGGAGGGCGACGACGCCATCCGTACCGCCCAGTCG 
ATGCTGACCCGTTGA