ViewGene
Locus Name:
GeneID:
Location:

GeneID:3542
TrivialName: PA14_50800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50800
PAO1 Ortholog Locus:PA1049
Sequence Length:648
Protein Length:215
Start: 4513542
Stop: 4512895
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04438.1|AE004537_3 (AE004537) pyridoxine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1]
Identities = 214/215 (99%), Positives = 214/215 (99%)
Sequence:
ATGACCCAGTCCCTGGCCGATATGCGCCGCGAGTACACCCGCGATGGCCTCAGCGAGGCCAACGCCCCTAGC
GATCCCTTCAGCCTGTTCCGCCAGTGGTTCGACGACGCGGTGAAGACCGAGCGCCTGCCGGTCGAACCCAAC
GCCATGACCCTGGCCACCGTCGACGCCGACGGCTATCCGCATTGCCGTATCCTCCTGCTCAAGGGCCTCGAC
GAGCGCGGCTTCACCTTCTTCACCAACTACGAAAGCGCCAAGGGCCGGCAACTGGCGGCCAATCCGCGGGCG
GCCATGACCTTCTTCTGGCCGGCGCTGGAGCGTCAGGTGCGCATCGAAGGCAGCGTCGAGAAGGTCACTCCC
GAGGAATCCGACGCCTACTACCAGGTGCGTCCGCTGGGCAGTCGCCTGGGCGCCTGGGCCTCGCCGCAGAGC
CGGGTCATCGCCGATCGCGCCGAGCTGGAACGGCTGCTCGCGGACACCGAGCGGCGTTTCGCCGACCAGCCG
CCGAGCTGTCCCGAGCACTGGGGCGGCTACCGTCTCCTGCCGCAGCGCATCGAGTTCTGGCAGGGGCGGCCG
AGCCGCCTGCACGACCGTCTCGACTATCGACGCCAGGACGGCGGCTGGTCGCGCGAACGCCTGGCGCCCTGA
Translation:
MTQSLADMRREYTRDGLSEANAPSDPFSLFRQWFDDAVKTERLPVEPNAMTLATVDADGYPHCRILLLKGLD
ERGFTFFTNYESAKGRQLAANPRAAMTFFWPALERQVRIEGSVEKVTPEESDAYYQVRPLGSRLGAWASPQS
RVIADRAELERLLADTERRFADQPPSCPEHWGGYRLLPQRIEFWQGRPSRLHDRLDYRRQDGGWSRERLAP*
AnnotationID:3550GeneID:3542
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 14:02:32
Gene Name:pdxH
Confidence Code:2
GeneProduct:pyridoxine 5'-phosphate oxidase
Cell Localization:()
Synonyms:PA1049
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0259
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Vitamin B6 metabolism 
Homology:






 
Structural Features:
COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
       CD-Length = 214 residues, 100.0% aligned
       Score =  308 bits (791), Expect = 2e-85






   
Genomic Context:
In E. coli, pdxH is cotranscribed with tyrS. In P. aeruginosa the two genes are far apart. 






   
Comment:


















    ReferenceID:7087




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24229




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3542
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5649
                           PA1049_tr
                           translation of PA1049
                           215
                           99.53
                           99.53
                           0
                           1143.0
     

     
     
157380
                           gb|AAG04438.1|AE004537_3
                           (AE004537) pyridoxine 5'-phosphate oxidase [Pseudomonas aeruginosa PAO1]
                           215
                           99.53
                           99.53
                           0
                           1143.0
     

     
     
157381
                           gb|AAN66754.1|AE016303_9
                           (AE016778) pyridoxamine-phosphate oxidase [Pseudomonas putida KT2440]
                           215
                           80.00
                           87.90
                           0
                           924.0
     

     
     
157382
                           gb|AAO57572.1|
                           (AE016870) pyridoxamine 5'-phosphate oxidase [Pseudomonas syringae pv. tomato str. DC3000]
                           215
                           79.06
                           88.83
                           0
                           918.0
     

     
     
157383
                           emb|CAD14297.1|
                           (AL646060) PROBABLE PYRIDOXAMINE 5'-PHOSPHATE OXIDASE (PNP/PMP OXIDASE) OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           216
                           64.35
                           73.14
                           5
                           692.0
     

     






      

          
GC ORFID: 46544How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1049Glimmer Score: 

          
Start: 440366Stop: 441013

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1049 translation of PA1049Homolog Bit Score 444.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6298 (ORF: BLASTX 353.0), t_PA1049 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGTCCCTGGCCGATATGCGCCGCGAGTACACCCGCGATGGCCTCAGCGAGGCCAACGCCCCTAGC 
GATCCCTTCAGCCTGTTCCGCCAGTGGTTCGACGACGCGGTGAAGACCGAGCGCCTGCCGGTCGAACCCAAC 
GCCATGACCCTGGCCACCGTCGACGCCGACGGCTATCCGCATTGCCGTATCCTCCTGCTCAAGGGCCTCGAC 
GAGCGCGGCTTCACCTTCTTCACCAACTACGAAAGCGCCAAGGGCCGGCAACTGGCGGCCAATCCGCGGGCG 
GCCATGACCTTCTTCTGGCCGGCGCTGGAGCGTCAGGTGCGCATCGAAGGCAGCGTCGAGAAGGTCACTCCC 
GAGGAATCCGACGCCTACTACCAGGTGCGTCCGCTGGGCAGTCGCCTGGGCGCCTGGGCCTCGCCGCAGAGC 
CGGGTCATCGCCGATCGCGCCGAGCTGGAACGGCTGCTCGCGGACACCGAGCGGCGTTTCGCCGACCAGCCG 
CCGAGCTGTCCCGAGCACTGGGGCGGCTACCGTCTCCTGCCGCAGCGCATCGAGTTCTGGCAGGGGCGGCCG 
AGCCGCCTGCACGACCGTCTCGACTATCGACGCCAGGACGGCGGCTGGTCGCGCGAACGCCTGGCGCCCTGA