ViewGene

Locus Name:
GeneID:
Location:

GeneID:3541
TrivialName: PA14_53510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53510
PAO1 Ortholog Locus:PA0832
Sequence Length:642
Protein Length:213
Start: 4744756
Stop: 4744115
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04221.1|AE004518_2 (AE004518) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 212/213 (99%), Positives = 212/213 (99%)
Sequence:
ATGTCGACATCCCCCGCGCTGATCCGCGAAACCTTTCCCGTCGGGCCTTTGCAGTGCAACTGCACCATCATT
GGCGATCCGCTGACCAGGAAGGCCATCGTCGTCGATCCGGGCGGCGACCACGAACTGATCCTGCAGCGCCTC
GACCGCCTCGGCCTGCAGGTGGTCAGCATCATCCATACCCACGCGCACCTGGATCACTTCCTCGCCTCCGGC
GAGATGAAGAAGCGCACCGGCGCCAGCCTGCACCTGCACAAGGACGACCAGTTCCTCTGGGACAACCTGGAG
ATGCAGTGCCAACTGTTCGGCGTGCCCTACACGCCGGTGCCGGCCCCGGACCGCTGGCTGGCCGACGACGAG
GAACTGGCCTGCGGTTGCGGAGTGGCACTGCACACGCCGGGGCATACGCCGGGCTCGATGAGTTTCTGGTTC
CCCCGGGCGAAGCTGCTGATCGCCGGCGACACCCTGTTCCGCCGTGGCATCGGCCGCACCGACCTGTGGGGC
GGCGACTCGGCGGCGATCCAGCGTTCGATCAGGCTGCGCCTGTACAGCCTCGACGAGGACGCCACGGTGGTC
GCCGGCCACGGCCCGGACACCACGCTGGGCGAGGAGATGCGCGAGAATCCCTTCGTCAGGGGCTGA
Translation:
MSTSPALIRETFPVGPLQCNCTIIGDPLTRKAIVVDPGGDHELILQRLDRLGLQVVSIIHTHAHLDHFLASG
EMKKRTGASLHLHKDDQFLWDNLEMQCQLFGVPYTPVPAPDRWLADDEELACGCGVALHTPGHTPGSMSFWF
PRAKLLIAGDTLFRRGIGRTDLWGGDSAAIQRSIRLRLYSLDEDATVVAGHGPDTTLGEEMRENPFVRG*
AnnotationID:3549GeneID:3541
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 14:02:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0832, ycbL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0491
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only]
       CD-Length = 252 residues,  88.5% aligned
       Score =  114 bits (284), Expect = 2e-26
Genomic Context:
Comment:
ReferenceID:7085
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24227
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3541

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5648 PA0832_tr translation of PA0832 213 99.53 99.53 0 1141.0
157358 gb|AAG04221.1|AE004518_2 (AE004518) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 213 99.53 99.53 0 1141.0
157359 gb|AAN66397.1|AE016267_6 (AE016776) metallo-beta-lactamase family protein [Pseudomonas putida KT2440] 214 81.77 87.38 1 948.0
157361 gb|AAF42369.1| (AE002555) glyoxalase II family protein [Neisseria meningitidis MC58] 216 42.12 54.16 9 393.0
157375 emb|CAB83688.1| (AL162753) putative hydrolase [Neisseria meningitidis Z2491] 216 41.20 53.24 9 379.0
GC ORFID: 46543How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0832Glimmer Score:
Start: 209151Stop: 209792
Length: 642
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0832 translation of PA0832Homolog Bit Score 444.0
Other Homologs: t_PA0832 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGACATCCCCCGCGCTGATCCGCGAAACCTTTCCCGTCGGGCCTTTGCAGTGCAACTGCACCATCATT
GGCGATCCGCTGACCAGGAAGGCCATCGTCGTCGATCCGGGCGGCGACCACGAACTGATCCTGCAGCGCCTC
GACCGCCTCGGCCTGCAGGTGGTCAGCATCATCCATACCCACGCGCACCTGGATCACTTCCTCGCCTCCGGC
GAGATGAAGAAGCGCACCGGCGCCAGCCTGCACCTGCACAAGGACGACCAGTTCCTCTGGGACAACCTGGAG
ATGCAGTGCCAACTGTTCGGCGTGCCCTACACGCCGGTGCCGGCCCCGGACCGCTGGCTGGCCGACGACGAG
GAACTGGCCTGCGGTTGCGGAGTGGCACTGCACACGCCGGGGCATACGCCGGGCTCGATGAGTTTCTGGTTC
CCCCGGGCGAAGCTGCTGATCGCCGGCGACACCCTGTTCCGCCGTGGCATCGGCCGCACCGACCTGTGGGGC
GGCGACTCGGCGGCGATCCAGCGTTCGATCAGGCTGCGCCTGTACAGCCTCGACGAGGACGCCACGGTGGTC
GCCGGCCACGGCCCGGACACCACGCTGGGCGAGGAGATGCGCGAGAATCCCTTCGTCAGGGGCTGA