ViewGene
Locus Name:
GeneID:
Location:

GeneID:3539
TrivialName: PA14_02090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02090
PAO1 Ortholog Locus:PA0167
Sequence Length:666
Protein Length:221
Start: 190557
Stop: 191222
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03557.1|AE004454_9 (AE004454) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 220/221 (99%), Positives = 220/221 (99%)
Sequence:
ATGACCCTGACAGTGCCCGCCCACGACCCGGCCGCCCGCGACAAGCCGGCCGGGCGCATCCGCCAGAAgAAC
GAGGAGGCGATCCTCGCCGCGGCCGAGGAGGAGTTCGCCCGCCACGGCTTCAagGGCACCAgCATGAACACC
ATCGCGCAGAACGTTGGCCTGCCCAAGGCCAACCTGCACTACTACTTCGGCAACAAGCTGGGCCTCTACACG
GCGGTGCTGAGCAACATCCTCGAACTCTGGGACAGTACCTTCAACACCCTCTGCGTCGACGACGATCCGGCC
GAGGCGCTGGCCCGCTACATCCGCGCCAAGATGGAGTTCTCCCGCCGCTACCCGCTGGCCTCGCGGATCTTC
GCCATGGAGATCATCAGCGGCGGCGAGTGCCTCACCGCGCATTTCAACCAGGACTACCGCAGCTGGTTCCGC
GGCCGCGCCGCGGTATTCGAGGCCTGGATCGCCGCCGGCCGGATGGACCCGGTGGATCCCGTGCACCTGATC
TTCCTGCTCTGGGGCAGCACCCAGCACTACGCCGACTTCGCCAGCCAGATCGGCTTGGTCACCGGCCGCAAG
CGCATGTCCAGGCAGGACTTCGCCGCCGCCGCCGACAACCTGGTGCGGATCATCCTCAAGGGCTGCGGACTG
ACCCCGCCGGCGGCCTGA
Translation:
MTLTVPAHDPAARDKPAGRIRQKNEEAILAAAEEEFARHGFKGTSMNTIAQNVGLPKANLHYYFGNKLGLYT
AVLSNILELWDSTFNTLCVDDDPAEALARYIRAKMEFSRRYPLASRIFAMEIISGGECLTAHFNQDYRSWFR
GRAAVFEAWIAAGRMDPVDPVHLIFLLWGSTQHYADFASQIGLVTGRKRMSRQDFAAAADNLVRIILKGCGL
TPPAA*
AnnotationID:3547GeneID:3539
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:00
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA0167
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309,pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54313.1| (AE016858) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 218

 Score =  358 bits (920), Expect = 1e-98
 Identities = 176/220 (80%), Positives = 192/220 (87%), Gaps = 3/220 (1%)

>gb|AAN66221.1|AE016250_3 (AE016776) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 247

 Score =  353 bits (905), Expect = 5e-97
 Identities = 170/220 (77%), Positives = 190/220 (86%)








 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  92.0% aligned
Score = 64.3 bits (154), Expect = 1e-11
Identities = 42/191 (21%), Positives = 73/191 (38%), Gaps = 8/191 (4%)

pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 53.4 bits (129), Expect = 2e-08
Identities = 18/47 (38%), Positives = 27/47 (57%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7081




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24223




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33538




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3539_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3539
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5645
                           PA0167_tr
                           translation of PA0167
                           221
                           99.54
                           99.54
                           0
                           1145.0
     

     
     
157342
                           gb|AAG03557.1|AE004454_9
                           (AE004454) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           221
                           99.54
                           99.54
                           0
                           1145.0
     

     
     
157343
                           gb|AAO54313.1|
                           (AE016858) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           221
                           79.63
                           87.33
                           3
                           922.0
     

     
     
157344
                           gb|AAN66221.1|AE016250_3
                           (AE016776) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           248
                           68.54
                           76.61
                           28
                           905.0
     

     
     
157354
                           gb|AAO57167.1|
                           (AE016869) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           224
                           39.73
                           54.01
                           25
                           395.0
     

     






      

          
GC ORFID: 46541How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0167Glimmer Score: 

          
Start: 5991896Stop: 5992561

          
Length: 666


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0167 translation of PA0167Homolog Bit Score 445.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3589 (ORF: BLASTX 356.0), t_PA1504 (ORF: BLASTX 164.0), psyr_15may02_Scaffold1_revised_gene617 (ORF: BLASTX 162.0), t_PA0436 (ORF: BLASTX 158.0), t_PA0167 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTGACAGTGCCCGCCCACGACCCGGCCGCCCGCGACAAGCCGGCCGGGCGCATCCGCCAGAAgAAC 
GAGGAGGCGATCCTCGCCGCGGCCGAGGAGGAGTTCGCCCGCCACGGCTTCAagGGCACCAgCATGAACACC 
ATCGCGCAGAACGTTGGCCTGCCCAAGGCCAACCTGCACTACTACTTCGGCAACAAGCTGGGCCTCTACACG 
GCGGTGCTGAGCAACATCCTCGAACTCTGGGACAGTACCTTCAACACCCTCTGCGTCGACGACGATCCGGCC 
GAGGCGCTGGCCCGCTACATCCGCGCCAAGATGGAGTTCTCCCGCCGCTACCCGCTGGCCTCGCGGATCTTC 
GCCATGGAGATCATCAGCGGCGGCGAGTGCCTCACCGCGCATTTCAACCAGGACTACCGCAGCTGGTTCCGC 
GGCCGCGCCGCGGTATTCGAGGCCTGGATCGCCGCCGGCCGGATGGACCCGGTGGATCCCGTGCACCTGATC 
TTCCTGCTCTGGGGCAGCACCCAGCACTACGCCGACTTCGCCAGCCAGATCGGCTTGGTCACCGGCCGCAAG 
CGCATGTCCAGGCAGGACTTCGCCGCCGCCGCCGACAACCTGGTGCGGATCATCCTCAAGGGCTGCGGACTG 
ACCCCGCCGGCGGCCTGA