ViewGene
Locus Name:
GeneID:
Location:

GeneID:3538
TrivialName: PA14_16370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16370
PAO1 Ortholog Locus:PA3712
Sequence Length:696
Protein Length:231
Start: 1400168
Stop: 1400863
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07099.1|AE004790_4 (AE004790) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 229/231 (99%), Positives = 231/231 (100%)
Sequence:
ATGAATACCCGTGGTTTGCTCGACCAATTGCTCAAGTCCGGGCAGGAAATGTTGCAGAACAAGACCGGCGGC
AAGCCCGGCGCCAGCGGTGGCGGACAGCTCGGCAGCCTGCTTTCCGGCGCCGGCGGCGGAGCCCTGGCGGCT
GGCGCCATCGGCCTGCTGCTGGGAAACAAGAAGGCGCGCAAGTTCGGCGGCAAGGCGATCACCTACGGCGGC
CTTGCCGCGCTCGGGGTGATCGCCTACAAGGCCTACAACAACTGGCAGCAGCAACAGAGCGGCGCCGCGCCG
CAGGCGCAGCCGCAGACCGTCGACCGCCTGCCGGAAGCCCAGGCCGAAGTGCATAGCCACGCGATCCTCCAG
GCCATCGTCGGTGCGGCCAAGGCCGACGGCCACATCGACGAGCGCGAACGGCAGATGATCGAAGGCGAGGTG
GCCAAGCTGACCAGCGACCGCGAGGTGCAGGGCTGGCTGGAGCGCGAGCTGAACAAGCCGCTGGATCCGGCC
GAGATCGCCCGTGCCGCGAGCACCCCGGAGATCGCCGCGGAGATGTACCTGGCCAGCCTGCTGATGGTCGAC
GAGGAAAGCTTCATGGAGCGCTCCTACCTCGAGGAGCTGGCGCGGCAGCTGCGCCTGGAGCCGTCGTTCAAG
CTGGAGCTGGAGAACCAGGCCAGACAGGCGCTGCAGCGCCTGGCCTGA
Translation:
MNTRGLLDQLLKSGQEMLQNKTGGKPGASGGGQLGSLLSGAGGGALAAGAIGLLLGNKKARKFGGKAITYGG
LAALGVIAYKAYNNWQQQQSGAAPQAQPQTVDRLPEAQAEVHSHAILQAIVGAAKADGHIDERERQMIEGEV
AKLTSDREVQGWLERELNKPLDPAEIARAASTPEIAAEMYLASLLMVDEESFMERSYLEELARQLRLEPSFK
LELENQARQALQRLA*
AnnotationID:3546GeneID:3538
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:14
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3712
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE34648.1| (BX640450) putative membrane protein [Bordetella bronchiseptica]
          Length = 226

 Score =  259 bits (662), Expect = 9e-69
 Identities = 134/226 (59%), Positives = 170/226 (75%), Gaps = 1/226 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7079




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24221




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31839




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3538_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3538
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5644
                           PA3712_tr
                           translation of PA3712
                           231
                           99.13
                           99.99
                           0
                           1145.0
     

     
     
157332
                           gb|AAG07099.1|AE004790_4
                           (AE004790) hypothetical protein PA3712 [Pseudomonas aeruginosa PAO1]
                           231
                           99.13
                           99.99
                           0
                           1145.0
     

     
     
157333
                           gb|AAN67109.1|AE016339_7
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           233
                           70.81
                           83.26
                           9
                           830.0
     

     
     
157334
                           gb|AAO55012.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           254
                           62.20
                           74.40
                           29
                           791.0
     

     
     
157335
                           emb|CAE34648.1|
                           (BX640450) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           231
                           58.00
                           73.59
                           5
                           663.0
     

     






      

          
GC ORFID: 46540How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3712Glimmer Score: 

          
Start: 3553769Stop: 3553074

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3712 translation of PA3712Homolog Bit Score 445.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4577 (ORF: BLASTX 302.0), t_PA3712 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATACCCGTGGTTTGCTCGACCAATTGCTCAAGTCCGGGCAGGAAATGTTGCAGAACAAGACCGGCGGC 
AAGCCCGGCGCCAGCGGTGGCGGACAGCTCGGCAGCCTGCTTTCCGGCGCCGGCGGCGGAGCCCTGGCGGCT 
GGCGCCATCGGCCTGCTGCTGGGAAACAAGAAGGCGCGCAAGTTCGGCGGCAAGGCGATCACCTACGGCGGC 
CTTGCCGCGCTCGGGGTGATCGCCTACAAGGCCTACAACAACTGGCAGCAGCAACAGAGCGGCGCCGCGCCG 
CAGGCGCAGCCGCAGACCGTCGACCGCCTGCCGGAAGCCCAGGCCGAAGTGCATAGCCACGCGATCCTCCAG 
GCCATCGTCGGTGCGGCCAAGGCCGACGGCCACATCGACGAGCGCGAACGGCAGATGATCGAAGGCGAGGTG 
GCCAAGCTGACCAGCGACCGCGAGGTGCAGGGCTGGCTGGAGCGCGAGCTGAACAAGCCGCTGGATCCGGCC 
GAGATCGCCCGTGCCGCGAGCACCCCGGAGATCGCCGCGGAGATGTACCTGGCCAGCCTGCTGATGGTCGAC 
GAGGAAAGCTTCATGGAGCGCTCCTACCTCGAGGAGCTGGCGCGGCAGCTGCGCCTGGAGCCGTCGTTCAAG 
CTGGAGCTGGAGAACCAGGCCAGACAGGCGCTGCAGCGCCTGGCCTGA