ViewGene
Locus Name:
GeneID:
Location:

GeneID:3537
TrivialName: PA14_24350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24350
PAO1 Ortholog Locus:PA3077
Sequence Length:672
Protein Length:223
Start: 2117452
Stop: 2116781
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06465.1|AE004731_13 (AE004731) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 223/223 (100%), Positives = 223/223 (100%)
Sequence:
ATGCATATCCACGTACTCGTCGTCGAAGACAACTTCGATCTCGCCGGCACCGTCATCGACTACCTCGAGGCC
GCCGGGGTGGTCTGCGATCACGCCCGCGACGGCCAGGCCGGCCTCAACCTGGCGCGCGCCAACCGCTACGAC
GTGATCCTGCTGGACATCATGCTGCCGCGCATCAACGGCCGGCAGGTCTGTCGCCAGCTGCGCGAAGCCGGC
CTGCAGACCCCGGTACTCATGCTCACCGCCCTGGATACCCTGCAGGACAAGCTCGACGGCTTCGACGCCGGC
GCCGACGACTATCTGCTCAAGCCCTTCGAACTGCCGGAGCTGCTGGTCCGCCTGCAAGCCCTCAGCCGGCGC
CGCAGCGGCCAGGCCCAGCGCCTGCAGGTCGACGACCTGGTGATGGACCTCGACAGCCGCCAGGCCAGCCGC
GGCGGCACGCCCCTGGCGCTGTCCCCCACCGCCTGGAAGATCCTCGAGTGCCTGATGCGCGCCAGCCCCGCG
CTGGTCACCCGCGAGCAGCTGGGGCGCAGCGTCTGGGGCGACGAGCCGCCGGAAAGCAACACCCTCAACGTG
CACATGCACCACCTGCGCAGCACCGTCGACAAGGGGTTCGCCACCCCTCTGATCCATACCCTGCACAGCGTC
GGCTTCCAGCTGGAGCGAAAATGA
Translation:
MHIHVLVVEDNFDLAGTVIDYLEAAGVVCDHARDGQAGLNLARANRYDVILLDIMLPRINGRQVCRQLREAG
LQTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSGQAQRLQVDDLVMDLDSRQASR
GGTPLALSPTAWKILECLMRASPALVTREQLGRSVWGDEPPESNTLNVHMHHLRSTVDKGFATPLIHTLHSV
GFQLERK*
AnnotationID:3545GeneID:3537
AnnotatorUID: danlee
Modification Date/Time: 2006-03-27 17:05:27
Gene Name:
Confidence Code:3
GeneProduct:putative two-component system regulatory protein
Cell Localization:()
Synonyms:PA3077
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative DNA-binding response regulator ColR
Functional Category Confidence Code:5
COGs:COG0745
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM38094.1| (AE011971) two-component system regulatory protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 225

 Score =  220 bits (561), Expect = 4e-57
 Identities = 117/220 (53%), Positives = 156/220 (70%), Gaps = 2/220 (0%)

>gb|AAO29749.1| (AE012560) two-component system, regulatory protein [Xylella
           fastidiosa Temecula1]
          Length = 225

 Score =  219 bits (559), Expect = 7e-57
 Identities = 116/220 (52%), Positives = 155/220 (70%), Gaps = 2/220 (0%)

>gb|AAN66526.1|AE016281_7 (AE016777) DNA-binding response regulator ColR [Pseudomonas putida
           KT2440]
          Length = 227

 Score =  211 bits (536), Expect = 3e-54
 Identities = 109/220 (49%), Positives = 150/220 (68%), Gaps = 2/220 (0%)








 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like 
receiver domain and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues,  99.1% aligned
Score =  201 bits (512), Expect = 6e-53
Identities = 94/228 (41%), Positives = 141/228 (61%), Gaps = 9/228 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7077




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32436




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3537_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3537
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5642
                           PA3077_tr
                           translation of PA3077
                           223
                           99.99
                           99.99
                           0
                           1145.0
     

     
     
157281
                           gb|AAG06465.1|AE004731_13
                           (AE004731) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           223
                           99.99
                           99.99
                           0
                           1145.0
     

     
     
157282
                           gb|AAM38094.1|
                           (AE011971) two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306]
                           227
                           51.54
                           68.72
                           6
                           562.0
     

     
     
157283
                           gb|AAM42378.1|
                           (AE012426) two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           227
                           51.54
                           68.72
                           6
                           562.0
     

     
     
157284
                           gb|AAO29749.1|
                           (AE012560) two-component system, regulatory protein [Xylella fastidiosa Temecula1]
                           227
                           51.10
                           68.28
                           6
                           560.0
     

     






      

          
GC ORFID: 46539How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3077Glimmer Score: 

          
Start: 2836478Stop: 2837149

          
Length: 672


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3077 translation of PA3077Homolog Bit Score 445.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2057 (ORF: BLASTX 210.0), psyr_15may02_Scaffold2_revised_gene3222 (ORF: BLASTX 195.0), psyr_15may02_Scaffold11_revised_gene1809 (ORF: BLASTX 192.0), t_PA3077 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATATCCACGTACTCGTCGTCGAAGACAACTTCGATCTCGCCGGCACCGTCATCGACTACCTCGAGGCC 
GCCGGGGTGGTCTGCGATCACGCCCGCGACGGCCAGGCCGGCCTCAACCTGGCGCGCGCCAACCGCTACGAC 
GTGATCCTGCTGGACATCATGCTGCCGCGCATCAACGGCCGGCAGGTCTGTCGCCAGCTGCGCGAAGCCGGC 
CTGCAGACCCCGGTACTCATGCTCACCGCCCTGGATACCCTGCAGGACAAGCTCGACGGCTTCGACGCCGGC 
GCCGACGACTATCTGCTCAAGCCCTTCGAACTGCCGGAGCTGCTGGTCCGCCTGCAAGCCCTCAGCCGGCGC 
CGCAGCGGCCAGGCCCAGCGCCTGCAGGTCGACGACCTGGTGATGGACCTCGACAGCCGCCAGGCCAGCCGC 
GGCGGCACGCCCCTGGCGCTGTCCCCCACCGCCTGGAAGATCCTCGAGTGCCTGATGCGCGCCAGCCCCGCG 
CTGGTCACCCGCGAGCAGCTGGGGCGCAGCGTCTGGGGCGACGAGCCGCCGGAAAGCAACACCCTCAACGTG 
CACATGCACCACCTGCGCAGCACCGTCGACAAGGGGTTCGCCACCCCTCTGATCCATACCCTGCACAGCGTC 
GGCTTCCAGCTGGAGCGAAAATGA