ViewGene

Locus Name:
GeneID:
Location:

GeneID:3536
TrivialName: PA14_31960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31960
PAO1 Ortholog Locus:PA2523
Sequence Length:675
Protein Length:224
Start: 2783528
Stop: 2782854
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05911.1|AE004679_5 (AE004679) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 224/224 (100%), Positives = 224/224 (100%)
Sequence:
ATGCGCATCCTTATTATCGAAGATGAAGTCAAGACTGCCGACTACCTGCACCAGGGCCTGACCGAAAGCGGC
TACATCGTCGACCGCGCCAACGATGGCATCGACGGCCTGCACATGGCCTTGCAACACCCTTACGAACTGGTG
ATCCTCGACGTCAACCTGCCCGGCATCGACGGCTGGGACCTGCTCCGCCGCCTGCGCGAACGCAGCAGCGCG
CGGGTGATGATGCTCACCGGGCATGGCAGGCTGACCGACAAGGTGCGCGGCCTCGATCTCGGCGCCGACGAC
TTCATGGTCAAGCCGTTCCAGTTCCCCGAACTGCTGGCGCGGGTCCGCTCGCTGCTGCGCCGCCACGACCAG
GCACCGATGCAGGACGTCCTGCGGGTCGCCGACCTGGAGCTGGACGCCAGCCGCCACCGGGCCTTCCGCGGC
CGGGTGCGGATCAACCTGACGACCAAGGAGTTCGCCCTGCTGCACCTGCTGATGCGGCGCAACGGCGACGTC
ATCACCCGGACGCAGATCATCTCGCTGATCTGGGACATGAACTTCGACAACGACTCCAACGTGGTGGAGGTC
GCCATCTGCCGCCTGCGGGCGAAGATCGACGACGGCTTCGACCTCAAGCTGATCCATACCATTCGCGGCGTC
GGCTACGTCCTGGAAGCGCGCCGATGA
Translation:
MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGWDLLRRLRERSSA
RVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHDQAPMQDVLRVADLELDASRHRAFRG
RVRINLTTKEFALLHLLMRRNGDVITRTQIISLIWDMNFDNDSNVVEVAICRLRAKIDDGFDLKLIHTIRGV
GYVLEARR*
AnnotationID:3544GeneID:3536
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 18:06:26
Gene Name:
Confidence Code:3
GeneProduct:putative DNA-binding heavy metal response regulator
Cell Localization:()
Synonyms:czrR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67060.1|AE016334_9 (AE016779) DNA-binding response regulator CzrR [Pseudomonas putida
           KT2440]
          Length = 224

 Score =  328 bits (840), Expect = 2e-89
 Identities = 161/223 (72%), Positives = 191/223 (85%)

>gb|AAO53922.1| (AE016857) DNA-binding heavy metal response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 224

 Score =  317 bits (812), Expect = 3e-86
 Identities = 152/223 (68%), Positives = 191/223 (85%)

>emb|CAD17640.1| (AL646079) PROBABLE RESPONSE REGULATOR FOR COBALT ZINC CADMIUM
           RESISTANCE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 224

 Score =  256 bits (655), Expect = 5e-68
 Identities = 124/223 (55%), Positives = 172/223 (77%), Gaps = 5/223 (2%)
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and 
a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues,  99.1% aligned
Score =  206 bits (526), Expect = 2e-54
Identities = 99/228 (43%), Positives = 137/228 (60%), Gaps = 7/228 (3%)
Genomic Context:
Comment:
ReferenceID:7075
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24217
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33081
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3536_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3536

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5637 PA2523_tr translation of PA2523 224 99.99 99.99 0 1144.0
157140 emb|CAB56468.1| (Y14018) czrR protein [Pseudomonas aeruginosa] 224 99.99 99.99 0 1144.0
157139 gb|AAG05911.1|AE004679_5 (AE004679) probable two-component response regulator [Pseudomonas aeruginosa PAO1] 224 99.99 99.99 0 1144.0
157141 gb|AAN67060.1|AE016334_9 (AE016779) DNA-binding response regulator CzrR [Pseudomonas putida KT2440] 224 71.87 85.26 0 838.0
157142 gb|AAG09631.1| (AY007258) CztR [Pseudomonas fluorescens] 224 70.98 85.26 0 836.0
GC ORFID: 46538How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2523Glimmer Score:
Start: 2170398Stop: 2171072
Length: 675
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2523 translation of PA2523Homolog Bit Score 445.0
Other Homologs: psyr_15may02_Scaffold9_revised_gene8194 (ORF: BLASTX 256.0), t_PA1437 (ORF: BLASTX 255.0), t_PA4885 (ORF: BLASTX 254.0), psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 250.0), t_PA2809 (ORF: BLASTX 245.0), psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 244.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 157.0), psyr_15may02_Scaffold11_revised_gene1928 (ORF: BLASTX 154.0), t_PA4381 (ORF: BLASTX 147.0), t_PA2523 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCATCCTTATTATCGAAGATGAAGTCAAGACTGCCGACTACCTGCACCAGGGCCTGACCGAAAGCGGC
TACATCGTCGACCGCGCCAACGATGGCATCGACGGCCTGCACATGGCCTTGCAACACCCTTACGAACTGGTG
ATCCTCGACGTCAACCTGCCCGGCATCGACGGCTGGGACCTGCTCCGCCGCCTGCGCGAACGCAGCAGCGCG
CGGGTGATGATGCTCACCGGGCATGGCAGGCTGACCGACAAGGTGCGCGGCCTCGATCTCGGCGCCGACGAC
TTCATGGTCAAGCCGTTCCAGTTCCCCGAACTGCTGGCGCGGGTCCGCTCGCTGCTGCGCCGCCACGACCAG
GCACCGATGCAGGACGTCCTGCGGGTCGCCGACCTGGAGCTGGACGCCAGCCGCCACCGGGCCTTCCGCGGC
CGGGTGCGGATCAACCTGACGACCAAGGAGTTCGCCCTGCTGCACCTGCTGATGCGGCGCAACGGCGACGTC
ATCACCCGGACGCAGATCATCTCGCTGATCTGGGACATGAACTTCGACAACGACTCCAACGTGGTGGAGGTC
GCCATCTGCCGCCTGCGGGCGAAGATCGACGACGGCTTCGACCTCAAGCTGATCCATACCATTCGCGGCGTC
GGCTACGTCCTGGAAGCGCGCCGATGA