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ViewGene |
Locus Name:
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GeneID: |
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Location: |
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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05911.1|AE004679_5 (AE004679) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 224/224 (100%), Positives = 224/224 (100%)
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Sequence:
ATGCGCATCCTTATTATCGAAGATGAAGTCAAGACTGCCGACTACCTGCACCAGGGCCTGACCGAAAGCGGC
TACATCGTCGACCGCGCCAACGATGGCATCGACGGCCTGCACATGGCCTTGCAACACCCTTACGAACTGGTG
ATCCTCGACGTCAACCTGCCCGGCATCGACGGCTGGGACCTGCTCCGCCGCCTGCGCGAACGCAGCAGCGCG
CGGGTGATGATGCTCACCGGGCATGGCAGGCTGACCGACAAGGTGCGCGGCCTCGATCTCGGCGCCGACGAC
TTCATGGTCAAGCCGTTCCAGTTCCCCGAACTGCTGGCGCGGGTCCGCTCGCTGCTGCGCCGCCACGACCAG
GCACCGATGCAGGACGTCCTGCGGGTCGCCGACCTGGAGCTGGACGCCAGCCGCCACCGGGCCTTCCGCGGC
CGGGTGCGGATCAACCTGACGACCAAGGAGTTCGCCCTGCTGCACCTGCTGATGCGGCGCAACGGCGACGTC
ATCACCCGGACGCAGATCATCTCGCTGATCTGGGACATGAACTTCGACAACGACTCCAACGTGGTGGAGGTC
GCCATCTGCCGCCTGCGGGCGAAGATCGACGACGGCTTCGACCTCAAGCTGATCCATACCATTCGCGGCGTC
GGCTACGTCCTGGAAGCGCGCCGATGA |
Translation:
MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGWDLLRRLRERSSA
RVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHDQAPMQDVLRVADLELDASRHRAFRG
RVRINLTTKEFALLHLLMRRNGDVITRTQIISLIWDMNFDNDSNVVEVAICRLRAKIDDGFDLKLIHTIRGV
GYVLEARR* |
AnnotationID:3544 | GeneID:3536 |
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Modification Date/Time: |
2005-03-06 18:06:26 |
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GeneProduct: | putative DNA-binding heavy metal response regulator |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (28) Two-component regulatory systems |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transcriptional regulator |
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Homology: | >gb|AAN67060.1|AE016334_9 (AE016779) DNA-binding response regulator CzrR [Pseudomonas putida
KT2440]
Length = 224
Score = 328 bits (840), Expect = 2e-89
Identities = 161/223 (72%), Positives = 191/223 (85%)
>gb|AAO53922.1| (AE016857) DNA-binding heavy metal response regulator [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 224
Score = 317 bits (812), Expect = 3e-86
Identities = 152/223 (68%), Positives = 191/223 (85%)
>emb|CAD17640.1| (AL646079) PROBABLE RESPONSE REGULATOR FOR COBALT ZINC CADMIUM
RESISTANCE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
solanacearum]
Length = 224
Score = 256 bits (655), Expect = 5e-68
Identities = 124/223 (55%), Positives = 172/223 (77%), Gaps = 5/223 (2%) |
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Structural Features: | COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and
a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 99.1% aligned
Score = 206 bits (526), Expect = 2e-54
Identities = 99/228 (43%), Positives = 137/228 (60%), Gaps = 7/228 (3%) |
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Homologs By Global Alignment |
Gene ID:3536 |
Identity: |
0% |
10% |
20% |
30% |
40% |
50% |
60% |
70% |
80% |
90% |
100% |
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HomologID |
Accession |
Description |
Length |
PctIdentity |
PctSimilarity |
Gaps |
Score |
5637 |
PA2523_tr |
translation of PA2523 |
224 |
99.99 |
99.99 |
0 |
1144.0 |
157140 |
emb|CAB56468.1| |
(Y14018) czrR protein [Pseudomonas aeruginosa] |
224 |
99.99 |
99.99 |
0 |
1144.0 |
157139 |
gb|AAG05911.1|AE004679_5 |
(AE004679) probable two-component response regulator [Pseudomonas aeruginosa PAO1] |
224 |
99.99 |
99.99 |
0 |
1144.0 |
157141 |
gb|AAN67060.1|AE016334_9 |
(AE016779) DNA-binding response regulator CzrR [Pseudomonas putida KT2440] |
224 |
71.87 |
85.26 |
0 |
838.0 |
157142 |
gb|AAG09631.1| |
(AY007258) CztR [Pseudomonas fluorescens] |
224 |
70.98 |
85.26 |
0 |
836.0 |
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GC ORFID: 46538 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA2523 | Glimmer Score: |
Start: 2170398 | Stop: 2171072 |
Length: 675 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA2523 translation of PA2523 | Homolog Bit Score 445.0 |
Other Homologs: psyr_15may02_Scaffold9_revised_gene8194 (ORF: BLASTX 256.0), t_PA1437 (ORF: BLASTX 255.0), t_PA4885 (ORF: BLASTX 254.0), psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 250.0), t_PA2809 (ORF: BLASTX 245.0), psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 244.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 157.0), psyr_15may02_Scaffold11_revised_gene1928 (ORF: BLASTX 154.0), t_PA4381 (ORF: BLASTX 147.0), t_PA2523 (ORF: GLIMMER) |
GC ORF Sequence |
ATGCGCATCCTTATTATCGAAGATGAAGTCAAGACTGCCGACTACCTGCACCAGGGCCTGACCGAAAGCGGC TACATCGTCGACCGCGCCAACGATGGCATCGACGGCCTGCACATGGCCTTGCAACACCCTTACGAACTGGTG ATCCTCGACGTCAACCTGCCCGGCATCGACGGCTGGGACCTGCTCCGCCGCCTGCGCGAACGCAGCAGCGCG CGGGTGATGATGCTCACCGGGCATGGCAGGCTGACCGACAAGGTGCGCGGCCTCGATCTCGGCGCCGACGAC TTCATGGTCAAGCCGTTCCAGTTCCCCGAACTGCTGGCGCGGGTCCGCTCGCTGCTGCGCCGCCACGACCAG GCACCGATGCAGGACGTCCTGCGGGTCGCCGACCTGGAGCTGGACGCCAGCCGCCACCGGGCCTTCCGCGGC CGGGTGCGGATCAACCTGACGACCAAGGAGTTCGCCCTGCTGCACCTGCTGATGCGGCGCAACGGCGACGTC ATCACCCGGACGCAGATCATCTCGCTGATCTGGGACATGAACTTCGACAACGACTCCAACGTGGTGGAGGTC GCCATCTGCCGCCTGCGGGCGAAGATCGACGACGGCTTCGACCTCAAGCTGATCCATACCATTCGCGGCGTC GGCTACGTCCTGGAAGCGCGCCGATGA |
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