ViewGene
Locus Name:
GeneID:
Location:

GeneID:3535
TrivialName: PA14_58920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58920
PAO1 Ortholog Locus:
Sequence Length:681
Protein Length:226
Start: 5252505
Stop: 5253185
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84238.1| (AY273869) hypothetical protein RL114 [Pseudomonas aeruginosa]
Identities = 226/226 (100%), Positives = 226/226 (100%)
Sequence:
CTGAACAAGTTCGGCAGCGCCGCCGACCTTCGGAGCCAGCAGGCCAAATTGACCGGCGCTACGCGAGAAATA
CGCAAGCTGACTGGTGGCGGTATCGACCTGTTCGGGAAGCTGGGTTGCTACTTGAGCTTCGAACAAAAGCAG
CTCCTACAAGACGCAGCGCGCTTGCTCGACTCGGTGAACAAGCAGATCGAGCATGCGAAGGAAAAGCGTGAT
CGCTACGAGAAAAAAGCCAAGAAGCGGCGCGAGCTACGTGAGCGCCTGGCCAAGCAACTGGTCGCCTCGAAC
TACCCGCTTCCGGGAAATACGCTCGAAGATCGGCTGGAAATCCTGCAGATCGCGTTGATCTACAACCGGGCC
AGGGTGTTCGATCACCTGTACTCCACGCACCAGCTCCACTCAAAACTCAAACGCTGGCTGGAGCGTCCAAAG
CAGCTCATCGGATGGCGCAGTGAAGCCGAGTATTTCGCTAGTCAGGTGGGGAGCCTGCGATGTGACTTCATT
AGCCATCTGACTAACGAAATCGCGTACGACGATGGCAGTGAAGTCGAGGAGCGCCTGCGCGTCATCAAGCAG
AAGGTCGCTGACTGCACCGCACAGATCGCTCTGACCAGCGAGGAGCAGGAAACCCTTCGGCTCTGGACAGAC
GCTCTGCAATCGGCTCCGGAGGGCCTCATATGA
Translation:
MNKFGSAADLRSQQAKLTGATREIRKLTGGGIDLFGKLGCYLSFEQKQLLQDAARLLDSVNKQIEHAKEKRD
RYEKKAKKRRELRERLAKQLVASNYPLPGNTLEDRLEILQIALIYNRARVFDHLYSTHQLHSKLKRWLERPK
QLIGWRSEAEYFASQVGSLRCDFISHLTNEIAYDDGSEVEERLRVIKQKVADCTAQIALTSEEQETLRLWTD
ALQSAPEGLI*
AnnotationID:3543GeneID:3535
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:17
Gene Name:RL114
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
CP2 (Pseudomonas aeruginosa strain C, plasmid pKLC102)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14875




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24215




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3535
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
157138
                           gb|AAP84238.1|
                           (AY273869) hypothetical protein RL114 [Pseudomonas aeruginosa]
                           226
                           99.55
                           99.99
                           0
                           1146.0
     

     






      

          
GC ORFID: 46537How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL114Glimmer Score: 

          
Start: 4516184Stop: 4516864

          
Length: 681


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL114 226 Homolog: No significant similarity () translation of RL114Homolog Bit Score 446.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene156 (ORF: BLASTX 216.0), t_RL114 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGAACAAGTTCGGCAGCGCCGCCGACCTTCGGAGCCAGCAGGCCAAATTGACCGGCGCTACGCGAGAAATA 
CGCAAGCTGACTGGTGGCGGTATCGACCTGTTCGGGAAGCTGGGTTGCTACTTGAGCTTCGAACAAAAGCAG 
CTCCTACAAGACGCAGCGCGCTTGCTCGACTCGGTGAACAAGCAGATCGAGCATGCGAAGGAAAAGCGTGAT 
CGCTACGAGAAAAAAGCCAAGAAGCGGCGCGAGCTACGTGAGCGCCTGGCCAAGCAACTGGTCGCCTCGAAC 
TACCCGCTTCCGGGAAATACGCTCGAAGATCGGCTGGAAATCCTGCAGATCGCGTTGATCTACAACCGGGCC 
AGGGTGTTCGATCACCTGTACTCCACGCACCAGCTCCACTCAAAACTCAAACGCTGGCTGGAGCGTCCAAAG 
CAGCTCATCGGATGGCGCAGTGAAGCCGAGTATTTCGCTAGTCAGGTGGGGAGCCTGCGATGTGACTTCATT 
AGCCATCTGACTAACGAAATCGCGTACGACGATGGCAGTGAAGTCGAGGAGCGCCTGCGCGTCATCAAGCAG 
AAGGTCGCTGACTGCACCGCACAGATCGCTCTGACCAGCGAGGAGCAGGAAACCCTTCGGCTCTGGACAGAC 
GCTCTGCAATCGGCTCCGGAGGGCCTCATATGA