ViewGene

Locus Name:
GeneID:
Location:

GeneID:3533
TrivialName: PA14_11930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11930
PAO1 Ortholog Locus:PA4013
Sequence Length:711
Protein Length:236
Start: 1032325
Stop: 1033035
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07400.1|AE004818_6 (AE004818) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 234/236 (99%), Positives = 234/236 (99%)
Sequence:
ATGGCCTGGCAGGCCGCCCTCGAGGCGGTGATCCACCATCCGCTGTTCGGCGTCGGCGTGACCCTGGGCGCC
TACCAGTTGGCCCTGGCCGCCTATGAACGGACCCGCTGGGTGTTCCTGCAGCCGGTGCTGGTGTCGATGCTG
GTGGTGATCGGCGTACTGCTGCTTTGCGGCATCGACTACGACGAATACAGTGCCAGCGCCAAGGTCCTGACC
ATTCTCCTCGGCCCCGCCACGGTGGCCCTGGCGGTGCCGCTGTTCCTCAACCTGCGGCGTATCCGCCAATTG
TTCTGGCCGACCCTGCTGACCCTGGTGGTCGCCGGTACGCTGGCGACGGTGCTGGGCATCGCATTCGGCTGG
TTGTTCGGTGCCGAGCCGCGGATGCTGATGAGCATGGCGCCGAAGTCGGTGACCTCGCCGATCGCCATGCTG
GTGGCCAGCCAGATCGGCGGCGTGGCGGCGCTGGCCGCCGTGTTCGTACTGATCACCGGGGTGCTCGGGGCG
ATCCTCGGGCCGGAGCTGCTGCGCGCCATCGGCGTCCGGCACCCCGCCGCGCAGGGCATGGCGCTGGGCATG
ACGGCCCACGCGGTGGGCACGTCGCGGGCCTTGCAGGAAGGCGAGGAGTGTGGTGCCTTCGCCGCCCTGGCG
ATGAGCCTGATGGGCGTTGCCACCGCAGTGCTGCTACCGTTGGCGGTAGCGCTGGTTGCCTGA
Translation:
MAWQAALEAVIHHPLFGVGVTLGAYQLALAAYERTRWVFLQPVLVSMLVVIGVLLLCGIDYDEYSASAKVLT
ILLGPATVALAVPLFLNLRRIRQLFWPTLLTLVVAGTLATVLGIAFGWLFGAEPRMLMSMAPKSVTSPIAML
VASQIGGVAALAAVFVLITGVLGAILGPELLRAIGVRHPAAQGMALGMTAHAVGTSRALQEGEECGAFAALA
MSLMGVATAVLLPLAVALVA*
AnnotationID:3541GeneID:3533
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 12:12:15
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1346,pfam04172
Secondary Functional Category(ies):Cell envelope biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|11062 COG1346, LrgB, Putative effector of murein hydrolase
[Cell envelope biogenesis, outer membrane]
Length = 230
Score =  217 bits (554), Expect = 2e-57
Identities = 107/227 (47%), Positives = 157/227 (69%)
Genomic Context:
Comment:
ReferenceID:7069
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24211
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3533

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5636 PA4013_tr translation of PA4013 236 99.15 99.15 0 1147.0
157122 gb|AAG07400.1|AE004818_6 (AE004818) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 236 99.15 99.15 0 1147.0
157123 gb|AAN70384.1|AE016680_4 (AE016792) membrane protein, putative [Pseudomonas putida KT2440] 238 76.47 85.71 2 926.0
157124 gb|AAO54278.1| (AE016858) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 238 71.84 83.61 2 859.0
157126 emb|CAD16377.1| (AL646071) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 246 40.24 55.69 16 437.0
GC ORFID: 46535How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4013Glimmer Score:
Start: 3921613Stop: 3920903
Length: 711
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4013 translation of PA4013Homolog Bit Score 446.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3477 (ORF: BLASTX 337.0), t_PA4013 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCTGGCAGGCCGCCCTCGAGGCGGTGATCCACCATCCGCTGTTCGGCGTCGGCGTGACCCTGGGCGCC
TACCAGTTGGCCCTGGCCGCCTATGAACGGACCCGCTGGGTGTTCCTGCAGCCGGTGCTGGTGTCGATGCTG
GTGGTGATCGGCGTACTGCTGCTTTGCGGCATCGACTACGACGAATACAGTGCCAGCGCCAAGGTCCTGACC
ATTCTCCTCGGCCCCGCCACGGTGGCCCTGGCGGTGCCGCTGTTCCTCAACCTGCGGCGTATCCGCCAATTG
TTCTGGCCGACCCTGCTGACCCTGGTGGTCGCCGGTACGCTGGCGACGGTGCTGGGCATCGCATTCGGCTGG
TTGTTCGGTGCCGAGCCGCGGATGCTGATGAGCATGGCGCCGAAGTCGGTGACCTCGCCGATCGCCATGCTG
GTGGCCAGCCAGATCGGCGGCGTGGCGGCGCTGGCCGCCGTGTTCGTACTGATCACCGGGGTGCTCGGGGCG
ATCCTCGGGCCGGAGCTGCTGCGCGCCATCGGCGTCCGGCACCCCGCCGCGCAGGGCATGGCGCTGGGCATG
ACGGCCCACGCGGTGGGCACGTCGCGGGCCTTGCAGGAAGGCGAGGAGTGTGGTGCCTTCGCCGCCCTGGCG
ATGAGCCTGATGGGCGTTGCCACCGCAGTGCTGCTACCGTTGGCGGTAGCGCTGGTTGCCTGA