ViewGene
Locus Name:
GeneID:
Location:

GeneID:3531
TrivialName: PA14_16710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16710
PAO1 Ortholog Locus:PA3685
Sequence Length:681
Protein Length:226
Start: 1431174
Stop: 1431854
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07073.1|AE004788_3 (AE004788) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 225/226 (99%), Positives = 225/226 (99%)
Sequence:
ATGTCCACTCTGTTGGCCCTGGATACCTCCACCGAAGCCTGCTCCGTCGCCCTGCTCCACGAGGGGCGGGCG
CTCAGTCACTACGAGGTGATCCCGCGCCTGCACGCCCAGCGCCTGCTGCCGATGGTCCGCGACCTGCTCGAC
GAGGCCGGCGTCGCCCTGTCCGCGGTGGACGCCATCGCCTTCGGGCGCGGTCCGGGCGCCTTCACCGGCGTG
CGCATCGCCATCGGCGTGGTCCAGGGTCTGGCCTTCGCCCTGCAGCGCCCGGTACTGGCGGTCTCCGACCTG
GCGATCCTGGCCCAGCGGGCCTACCGCGAGCAGGGTGCGGAGCGGGTCGCCGCGGCCATCGACGCGCGGATG
GACGAGGTCTACTGGGGTTGCTACCAGTTGCAACAGGGCGAGATGCGCCTGGCCGGCAGCGAAGCGGTACTG
CCGCCCGAGCGGGTCGCCGTACCGTGGGACGCCGCTGCCGCGGATTGGTTCGGCGCCGGCACCGGCTGGGGC
TACGTCGAGCGCATGCCGCAGCGCCCGGCCGCGCTGGACGCGAGCCTGCTGCCGCATGCCGAGGACTTGCTC
AGCCTGGCCGGCTTCGCCTGGGCGCGCGGCGAAGGCGTGGAGGCGGAACAGGCGCTGCCGGTGTACCTGCGC
GACAACGTGGCGACGCCGAAAAAAGCGCCCTGA
Translation:
MSTLLALDTSTEACSVALLHEGRALSHYEVIPRLHAQRLLPMVRDLLDEAGVALSAVDAIAFGRGPGAFTGV
RIAIGVVQGLAFALQRPVLAVSDLAILAQRAYREQGAERVAAAIDARMDEVYWGCYQLQQGEMRLAGSEAVL
PPERVAVPWDAAAADWFGAGTGWGYVERMPQRPAALDASLLPHAEDLLSLAGFAWARGEGVEAEQALPVYLR
DNVATPKKAP*
AnnotationID:3539GeneID:3531
AnnotatorUID: diggins
Modification Date/Time: 2005-06-16 20:08:23
Gene Name:
Confidence Code:3
GeneProduct:putative protease with chaperone activity
Cell Localization:()
Synonyms:yeaZ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1214,pfam00814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20735.1| (AE008781) putative molecular chaperone [Salmonella typhimurium
           LT2]
          Length = 231

 Score =  198 bits (503), Expect = 2e-50
 Identities = 112/227 (49%), Positives = 143/227 (62%), Gaps = 10/227 (4%)

>gb|AAN80670.1|AE016761_245 (AE016761) Hypothetical protease yeaZ [Escherichia coli CFT073]
          Length = 231

 Score =  196 bits (499), Expect = 7e-50
 Identities = 109/224 (48%), Positives = 146/224 (65%), Gaps = 4/224 (1%)

>dbj|BAA15616.1| (D90825) O-sialoglycoprotein endopeptidase (EC 3.4.24.57)
           (Glycoprotease). [Escherichia coli]
          Length = 231

 Score =  195 bits (496), Expect = 2e-49
 Identities = 107/224 (47%), Positives = 145/224 (64%), Gaps = 4/224 (1%)







 
Structural Features:
COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 220 residues, 100.0% aligned
Score =  184 bits (468), Expect = 1e-47
Identities = 94/226 (41%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

pfam00814, Peptidase_M22, Glycoprotease family.
CD-Length = 263 residues, 100.0% aligned
Score =  147 bits (373), Expect = 1e-36
Identities = 71/263 (26%), Positives = 103/263 (39%), Gaps = 47/263 (17%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7065




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31861




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3531_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3531
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5634
                           PA3685_tr
                           translation of PA3685
                           226
                           99.55
                           99.55
                           0
                           1147.0
     

     
     
157060
                           gb|AAG07073.1|AE004788_3
                           (AE004788) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           226
                           99.55
                           99.55
                           0
                           1147.0
     

     
     
157061
                           gb|AAO55030.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           226
                           73.00
                           84.95
                           2
                           860.0
     

     
     
157062
                           gb|AAN67128.1|AE016341_11
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           226
                           72.12
                           84.51
                           2
                           839.0
     

     
     
157063
                           emb|CAE14425.1|
                           (BX571866) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           232
                           50.43
                           65.51
                           7
                           544.0
     

     






      

          
GC ORFID: 46533How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3685Glimmer Score: 

          
Start: 3522763Stop: 3522083

          
Length: 681


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3685 translation of PA3685Homolog Bit Score 446.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4603 (ORF: BLASTX 328.0), t_PA3685 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCACTCTGTTGGCCCTGGATACCTCCACCGAAGCCTGCTCCGTCGCCCTGCTCCACGAGGGGCGGGCG 
CTCAGTCACTACGAGGTGATCCCGCGCCTGCACGCCCAGCGCCTGCTGCCGATGGTCCGCGACCTGCTCGAC 
GAGGCCGGCGTCGCCCTGTCCGCGGTGGACGCCATCGCCTTCGGGCGCGGTCCGGGCGCCTTCACCGGCGTG 
CGCATCGCCATCGGCGTGGTCCAGGGTCTGGCCTTCGCCCTGCAGCGCCCGGTACTGGCGGTCTCCGACCTG 
GCGATCCTGGCCCAGCGGGCCTACCGCGAGCAGGGTGCGGAGCGGGTCGCCGCGGCCATCGACGCGCGGATG 
GACGAGGTCTACTGGGGTTGCTACCAGTTGCAACAGGGCGAGATGCGCCTGGCCGGCAGCGAAGCGGTACTG 
CCGCCCGAGCGGGTCGCCGTACCGTGGGACGCCGCTGCCGCGGATTGGTTCGGCGCCGGCACCGGCTGGGGC 
TACGTCGAGCGCATGCCGCAGCGCCCGGCCGCGCTGGACGCGAGCCTGCTGCCGCATGCCGAGGACTTGCTC 
AGCCTGGCCGGCTTCGCCTGGGCGCGCGGCGAAGGCGTGGAGGCGGAACAGGCGCTGCCGGTGTACCTGCGC 
GACAACGTGGCGACGCCGAAAAAAGCGCCCTGA