ViewGene

Locus Name:
GeneID:
Location:

GeneID: 353

TrivialName: PA14_65090

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_65090

PAO1 Ortholog Locus: PA4929

Sequence Length: 2022

Protein Length: 673

Start: 5802370

Stop: 5804391

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08314.1|AE004906_2 (AE004906) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 653/661 (98%), Positives = 656/661 (99%)

Sequence:

CTGGGTATTGCCTGCCGTCGGCCGGCTTCGAAAAAATGCCATCATTTCGCCACCTTCTTTCTATACTCCATT
CATCGTCATCTCACCCGGCCTCTAAGGCAGGCCCCCGGGAGAGTCATCGTGCGCCATCCTCTTGCCCTGCTC
GCGGTCATCTTCCTGCTACTGGCCAGCGCCGTTTCGCGCGCCGCGCCGGAGTTTCCAGCGCCCCCGGCCAGC
GGCGCCTGGTTGAACGGCTCGCTGGACCTGCTCGAAGACCCCGATGGCAACCTGGCGGTGGAGGACCTCGAA
CAAACGGAGCAGGCCGGCCGCTTCGTCGCCGCCGCCGGCCGCACCAGCGTCGGCCTCAGTCGCAGCGTCTGG
TGGCTGCGCCTCGACCTGCCGAGACGCGAGGCGGTATCCGGCGGCTGGTGGCTGGAAGTCGCCAGCGCCAGC
CTGCACGACCTGCGCCTGTACCTCCCCGACGAGCGCGGCGGGTTCCGCGAACATCGCAGCGGCGAAGCGGTG
CCCTTCGCCGAGGGCCGCGACCACGCCTATCGTCATCCGCTGTTCCAGCTCCCTCCCGGCGATGGGCCGTTG
CGCGTCTACCTGCGCAGCTACGATCCCGGCGGCAACGCCTTTCCGCTGAGGCTCTGGAGCCACGACGAACTG
CTGGAATACCGCAGCCAGGGCAACCTGCTGTTCGGCATGGCCTACGGGCTGATCCTCGCCCTGCTGCTGTAC
AACCTGTTCCTCTTCACCAGCCTGCGCGATCGCGCCTATTTCTGGTACGTGCTGACCGCTGCCAGCGCGCTG
GTGCTGACCCTGAGCATCAGCGGCCATGGTTTCGAGTATTTCTGGCCCGAGCGGGCGGTGCCCTGGTGGCTT
GACCGCCTGGCGCTGCTGGCGATCTGGGGCATCTGCGTGATCCGCTTCAGCCAGAACCTGCTGCAAAGCCGG
CAGCACGCACGCTGGGCCCATCACCTGCTGAACGCCTGTTGCCTGCTGTTCCTTGCCTGCCTGGCGTTCAAC
GCCGCCGGCTGGCGCTGGCAGGCGGCCGGCGTGCTGGCGCTGACCCTGCTGGCCAACCTACCGATCGCCATC
GGCCTGGCAGTGCAGCGCTGGCGCCAGGGTTCGGCCACGGCGCGCCTGTACCTGGTCGGCTTCGGCCTGGTG
CTCGGCAGCGTCAGCCTTGGCGTGATGCGCGCCACCGCGCTGGTCCAGCCGACCTCGGCCAACGCCATGGTC
TTCCCGCTGGCGCTGACCCTGGAGGCCCTGCTGTTCTCCCTGGCGCTCGCCTCGCGCATCCAGGATCTGAAG
CAGGAAAGGGCCCTGGCCCTGGACCAGGCCGACCAGGAAAAGAACGCGCGCCTGGCCCTGCTGCACAGCGCC
CAGCGCGACCTGGCACGCGCCGTGGAAGTCCGTACCAACGAGTTGAGCGAGGCCAATCGCCAGTTGCAGATG
CGCGAAGCGCAACTGCAGTACGCCGCCCATCACGACCCGCTGACCGGGCTTGGCAACCGCAGGCACCTGATG
GAGTTCGCCGAAAGCGCCCTGGACGACGCGCGCCGCCACGGCAACAGCATGGCGCTGCTGCTGATCGATCTG
GATCACTTCAAGCCGATCAACGATACCCATGGCCACGATGCCGGCGACTTCGTCCTGCAGAACGTGGCCCAG
CGGCTGCGCCATTGCGTGCGCACCGAGGATTGCGTGGCGCGCCTCGGCGGCGACGAATTCGCCGTGCTGGTC
GGCGGGTCGAATGCCGAGCAGCATGCCCGCGACATCGCCGAACGCCTGCTGCGAGAACTGGCGAAACCGGTG
GAGTTCGCCAAGCAGTGGCTGGTGATCACACCGAGCATCGGCGTCGCCCTGTTTCCCGGCGACGCCCTGCAG
TTCGGCAAACTCTACAAGGCCGCCGACCAGGCGCTGTACCGGGTCAAGGGCGCCGGGCGCGCCGGCTATGCG
ATGGCTGCCGACGATGAACGCGAGACCGCGCCGGCGCTCCCCTGGCCGACCGCCCTGGCACCGGAGCGTATC
TCCTGA

Translation:

MGIACRRPASKKCHHFATFFLYSIHRHLTRPLRQAPGRVIVRHPLALLAVIFLLLASAVSRAAPEFPAPPAS
GAWLNGSLDLLEDPDGNLAVEDLEQTEQAGRFVAAAGRTSVGLSRSVWWLRLDLPRREAVSGGWWLEVASAS
LHDLRLYLPDERGGFREHRSGEAVPFAEGRDHAYRHPLFQLPPGDGPLRVYLRSYDPGGNAFPLRLWSHDEL
LEYRSQGNLLFGMAYGLILALLLYNLFLFTSLRDRAYFWYVLTAASALVLTLSISGHGFEYFWPERAVPWWL
DRLALLAIWGICVIRFSQNLLQSRQHARWAHHLLNACCLLFLACLAFNAAGWRWQAAGVLALTLLANLPIAI
GLAVQRWRQGSATARLYLVGFGLVLGSVSLGVMRATALVQPTSANAMVFPLALTLEALLFSLALASRIQDLK
QERALALDQADQEKNARLALLHSAQRDLARAVEVRTNELSEANRQLQMREAQLQYAAHHDPLTGLGNRRHLM
EFAESALDDARRHGNSMALLLIDLDHFKPINDTHGHDAGDFVLQNVAQRLRHCVRTEDCVARLGGDEFAVLV
GGSNAEQHARDIAERLLRELAKPVEFAKQWLVITPSIGVALFPGDALQFGKLYKAADQALYRVKGAGRAGYA
MAADDERETAPALPWPTALAPERIS*

AnnotationID:362 GeneID:353

AnnotatorUID: danlee

Modification Date/Time: 2006-02-08 15:03:51

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA4929

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: cd01949, smart00267

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain.
             CD-Length = 155 residues,  98.7% aligned
             Score =  186 bits (473), Expect = 1e-47

smart00267, DUF1, Domain of Unknown Function with GGDEF motif.
             CD-Length = 172 residues, 100.0% aligned
             Score =  174 bits (442), Expect = 4e-44

Genomic Context:

Comment:

Confirmed frame-shift results in altered N-terminus compared to PAO1 PA4929.

ReferenceID:14117

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17851

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35098

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 353_cdd.html

URL:

Homologs By Global Alignment

Gene ID:353

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

588 PA4929_tr translation of PA4929 687 95.34 95.92 21 3397.0

28022 gb|AAG08314.1|AE004906_2 (AE004906) hypothetical protein PA4929 [Pseudomonas aeruginosa PAO1] 687 95.34 95.92 21 3397.0

28058 gb|AAQ61796.1| (AE016924) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 778 25.83 36.50 298 381.0

28082 gb|AAQ58638.1| (AE016913) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 730 24.93 33.83 259 328.0

28126 gb|AAG07720.1|AE004849_7 (AE004849) hypothetical protein PA4332 [Pseudomonas aeruginosa PAO1] 720 23.88 32.08 280 311.0

GC ORFID: `43355`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4929`	Glimmer Score:
Start: `5066051`	Stop: `5068072`
Length: `2022`
Start Codon: `CTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4929 translation of PA4929`	Homolog Bit Score `1313.0`
Other Homologs: `t_PA4929 (ORF: GLIMMER)`
GC ORF Sequence
CTGGGTATTGCCTGCCGTCGGCCGGCTTCGAAAAAATGCCATCATTTCGCCACCTTCTTTCTATACTCCATT CATCGTCATCTCACCCGGCCTCTAAGGCAGGCCCCCGGGAGAGTCATCGTGCGCCATCCTCTTGCCCTGCTC GCGGTCATCTTCCTGCTACTGGCCAGCGCCGTTTCGCGCGCCGCGCCGGAGTTTCCAGCGCCCCCGGCCAGC GGCGCCTGGTTGAACGGCTCGCTGGACCTGCTCGAAGACCCCGATGGCAACCTGGCGGTGGAGGACCTCGAA CAAACGGAGCAGGCCGGCCGCTTCGTCGCCGCCGCCGGCCGCACCAGCGTCGGCCTCAGTCGCAGCGTCTGG TGGCTGCGCCTCGACCTGCCGAGACGCGAGGCGGTATCCGGCGGCTGGTGGCTGGAAGTCGCCAGCGCCAGC CTGCACGACCTGCGCCTGTACCTCCCCGACGAGCGCGGCGGGTTCCGCGAACATCGCAGCGGCGAAGCGGTG CCCTTCGCCGAGGGCCGCGACCACGCCTATCGTCATCCGCTGTTCCAGCTCCCTCCCGGCGATGGGCCGTTG CGCGTCTACCTGCGCAGCTACGATCCCGGCGGCAACGCCTTTCCGCTGAGGCTCTGGAGCCACGACGAACTG CTGGAATACCGCAGCCAGGGCAACCTGCTGTTCGGCATGGCCTACGGGCTGATCCTCGCCCTGCTGCTGTAC AACCTGTTCCTCTTCACCAGCCTGCGCGATCGCGCCTATTTCTGGTACGTGCTGACCGCTGCCAGCGCGCTG GTGCTGACCCTGAGCATCAGCGGCCATGGTTTCGAGTATTTCTGGCCCGAGCGGGCGGTGCCCTGGTGGCTT GACCGCCTGGCGCTGCTGGCGATCTGGGGCATCTGCGTGATCCGCTTCAGCCAGAACCTGCTGCAAAGCCGG CAGCACGCACGCTGGGCCCATCACCTGCTGAACGCCTGTTGCCTGCTGTTCCTTGCCTGCCTGGCGTTCAAC GCCGCCGGCTGGCGCTGGCAGGCGGCCGGCGTGCTGGCGCTGACCCTGCTGGCCAACCTACCGATCGCCATC GGCCTGGCAGTGCAGCGCTGGCGCCAGGGTTCGGCCACGGCGCGCCTGTACCTGGTCGGCTTCGGCCTGGTG CTCGGCAGCGTCAGCCTTGGCGTGATGCGCGCCACCGCGCTGGTCCAGCCGACCTCGGCCAACGCCATGGTC TTCCCGCTGGCGCTGACCCTGGAGGCCCTGCTGTTCTCCCTGGCGCTCGCCTCGCGCATCCAGGATCTGAAG CAGGAAAGGGCCCTGGCCCTGGACCAGGCCGACCAGGAAAAGAACGCGCGCCTGGCCCTGCTGCACAGCGCC CAGCGCGACCTGGCACGCGCCGTGGAAGTCCGTACCAACGAGTTGAGCGAGGCCAATCGCCAGTTGCAGATG CGCGAAGCGCAACTGCAGTACGCCGCCCATCACGACCCGCTGACCGGGCTTGGCAACCGCAGGCACCTGATG GAGTTCGCCGAAAGCGCCCTGGACGACGCGCGCCGCCACGGCAACAGCATGGCGCTGCTGCTGATCGATCTG GATCACTTCAAGCCGATCAACGATACCCATGGCCACGATGCCGGCGACTTCGTCCTGCAGAACGTGGCCCAG CGGCTGCGCCATTGCGTGCGCACCGAGGATTGCGTGGCGCGCCTCGGCGGCGACGAATTCGCCGTGCTGGTC GGCGGGTCGAATGCCGAGCAGCATGCCCGCGACATCGCCGAACGCCTGCTGCGAGAACTGGCGAAACCGGTG GAGTTCGCCAAGCAGTGGCTGGTGATCACACCGAGCATCGGCGTCGCCCTGTTTCCCGGCGACGCCCTGCAG TTCGGCAAACTCTACAAGGCCGCCGACCAGGCGCTGTACCGGGTCAAGGGCGCCGGGCGCGCCGGCTATGCG ATGGCTGCCGACGATGAACGCGAGACCGCGCCGGCGCTCCCCTGGCCGACCGCCCTGGCACCGGAGCGTATC TCCTGA