ViewGene
Locus Name:
GeneID:
Location:

GeneID:3529
TrivialName: PA14_39250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39250
PAO1 Ortholog Locus:PA1953
Sequence Length:681
Protein Length:226
Start: 3494919
Stop: 3495599
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05341.1|AE004622_3 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 225/226 (99%), Positives = 225/226 (99%)
Sequence:
ATGCGCACGCTCATCCTTTCCCTGCTGCTGCTCGTCGACCTCACCGCCCAGGCGGCGACCCTCGGCTTTCCC
GCCCTGCCCGGCGGCGGCCTGGTCTACAAGCAGGTGCAGAGCATCCGCGAGCGGCGCTTCGCCGACCTGGTC
GAGCAGAAGACCGATTTCAGCTGCGGCGCCGCGGCCCTCGCGACCATCCTGGAGAAGGCCTACGGCGCCCCG
CTCGACGAGCAGGCGGTGATCCAGGGCATGCTCGCCCACGCCGACCCGGAGATCGTCCGCACCCAGGGCTTC
TCCATGCTCGACATGAAGCGCTACGTCGAATCCATGGGCATGCGCGCGCGCGGCTACCGGATCGAGGCGGCG
CAACTGGAACAACTGAAGATCCCCGCCATCGTGCTGATGGAAATCCGCGGCTACAAGCACTTCGTCGTCCTG
CAACGCACCCAGGGCGAGTACGTGTACGTGGGTGACCCGGCGCTGGGGCACAAACGCTACGCGCTGACAGAG
TTCGCCAAGGGCTGGAACGGCATCGTCTTCGCCGTGATCGGCCAGGGATACGACCGCGGCAATCCGCTGCTG
ACGCCGCCCGAACCGCTGACCGCGCGCAATCGCCTGGACCGCTTCAAACCGGTCAGGGACGCCGAACTGATG
GAGTTCGGCTTCATCCAGAGCGATTTCTTCTGA
Translation:
MRTLILSLLLLVDLTAQAATLGFPALPGGGLVYKQVQSIRERRFADLVEQKTDFSCGAAALATILEKAYGAP
LDEQAVIQGMLAHADPEIVRTQGFSMLDMKRYVESMGMRARGYRIEAAQLEQLKIPAIVLMEIRGYKHFVVL
QRTQGEYVYVGDPALGHKRYALTEFAKGWNGIVFAVIGQGYDRGNPLLTPPEPLTARNRLDRFKPVRDAELM
EFGFIQSDFF*
AnnotationID:3537GeneID:3529
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 13:01:26
Gene Name:
Confidence Code:3
GeneProduct:putative double-glycine peptidase
Cell Localization:()
Synonyms:PA1953
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3271
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3271, Predicted double-glycine peptidase
CD-Length = 201 residues,  99.5% aligned
Score =  192 bits (488), Expect = 4e-50
Identities = 74/214 (34%), Positives = 95/214 (44%), Gaps = 14/214 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7061




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24203




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32766




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3529_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3529
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5632
                           PA1953_tr
                           translation of PA1953
                           226
                           99.55
                           99.55
                           0
                           1147.0
     

     
     
157046
                           gb|AAG05341.1|AE004622_3
                           (AE004622) hypothetical protein PA1953 [Pseudomonas aeruginosa PAO1]
                           226
                           99.55
                           99.55
                           0
                           1147.0
     

     
     
157047
                           gb|AAN68463.1|AE016479_3
                           (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440]
                           226
                           62.83
                           80.53
                           0
                           782.0
     

     
     
157048
                           gb|AAQ58362.1|
                           (AE016912) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           235
                           50.21
                           66.80
                           10
                           574.0
     

     
     
157050
                           emb|CAD84700.1|
                           (BX321858) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           259
                           31.66
                           42.85
                           61
                           308.0
     

     






      

          
GC ORFID: 46531How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1953Glimmer Score: 

          
Start: 1458992Stop: 1458312

          
Length: 681


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1953 translation of PA1953Homolog Bit Score 446.0

          
Other Homologs:  t_PA1953 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACGCTCATCCTTTCCCTGCTGCTGCTCGTCGACCTCACCGCCCAGGCGGCGACCCTCGGCTTTCCC 
GCCCTGCCCGGCGGCGGCCTGGTCTACAAGCAGGTGCAGAGCATCCGCGAGCGGCGCTTCGCCGACCTGGTC 
GAGCAGAAGACCGATTTCAGCTGCGGCGCCGCGGCCCTCGCGACCATCCTGGAGAAGGCCTACGGCGCCCCG 
CTCGACGAGCAGGCGGTGATCCAGGGCATGCTCGCCCACGCCGACCCGGAGATCGTCCGCACCCAGGGCTTC 
TCCATGCTCGACATGAAGCGCTACGTCGAATCCATGGGCATGCGCGCGCGCGGCTACCGGATCGAGGCGGCG 
CAACTGGAACAACTGAAGATCCCCGCCATCGTGCTGATGGAAATCCGCGGCTACAAGCACTTCGTCGTCCTG 
CAACGCACCCAGGGCGAGTACGTGTACGTGGGTGACCCGGCGCTGGGGCACAAACGCTACGCGCTGACAGAG 
TTCGCCAAGGGCTGGAACGGCATCGTCTTCGCCGTGATCGGCCAGGGATACGACCGCGGCAATCCGCTGCTG 
ACGCCGCCCGAACCGCTGACCGCGCGCAATCGCCTGGACCGCTTCAAACCGGTCAGGGACGCCGAACTGATG 
GAGTTCGGCTTCATCCAGAGCGATTTCTTCTGA