ViewGene
Locus Name:
GeneID:
Location:

GeneID:3528
TrivialName: PA14_45880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45880
PAO1 Ortholog Locus:PA1437
Sequence Length:690
Protein Length:229
Start: 4077048
Stop: 4076359
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04826.1|AE004573_5 (AE004573) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 229/229 (100%), Positives = 229/229 (100%)
Sequence:
ATGCGGGTACTGATTGTCGAGGACGAGGCGAAGACGGCGGACTACCTGAACCGTGGCCTCAGTGAACAGGGG
TTCACCGTGGACCTGGCGGACAACGGCATCGACGGTCGCCACCTGGCGCTCCATGGCGAGTACGACGTGATC
GTGCTCGACGTGATGCTGCCGGGCGTCGACGGCTACGGCGTTCTGCGGGCGTTGCGCGAGCGGCGGCAGACC
CCGGTGATCATGCTCACCGCGCGCGAGCGCGTGGAAGACCGGGTGCGCGGGCTGCGCGAGGGCGCTGACGAC
TACCTGATCAAGCCGTTCTCCTTCCTCGAACTGGTTGCCCGCCTGCAGGCCCTGACCCGGCGCGGCGGCAAC
CACGAAAGCCATTCGCAGATGCGCATCGCCGACCTGTCCATCGACCTGCTCAGCCGCAAGGTCTTCCGCGGC
AACACTCGCCTGGAGCTGACTGCCAAGGAGTACGCGCTGCTCTGCGTGCTGGCCCAGCGCAGCGGCGAGATC
CTATCGAAGACGGCGATCGCCGAACTGGTCTGGGACATCAACTTCGATACCGATACCAATGTCGTGGAGGTG
GCGATCAAGCGCCTGCGCGCCAAGCTCGACGGTCCGTTCGAGAACAAGCTGCTGCATACCATCCGGGGCATG
GGCTACGTCCTGGAGAACCGTGCGCTGGCGGAGTCGGGCTGA
Translation:
MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGYGVLRALRERRQT
PVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNHESHSQMRIADLSIDLLSRKVFRG
NTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDINFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGM
GYVLENRALAESG*
AnnotationID:3536GeneID:3528
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 08:08:58
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA1437
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative DNA-binding heavy metal response regulator
Functional Category Confidence Code:5
COGs:COG0745,cd00156
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54831.1| (AE016860) DNA-binding heavy metal response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 225

 Score =  338 bits (868), Expect = 1e-92
 Identities = 171/224 (76%), Positives = 200/224 (89%), Gaps = 1/224 (0%)

>emb|CAE34834.1| (BX640450) two-component response regulator [Bordetella
           bronchiseptica]
          Length = 225

 Score =  293 bits (750), Expect = 5e-79
 Identities = 143/224 (63%), Positives = 187/224 (83%), Gaps = 2/224 (0%)

>gb|AAM85866.1|AE013833_4 (AE013833) putative 2-component transcriptional regulator [Yersinia
           pestis KIM]
          Length = 230

 Score =  286 bits (732), Expect = 7e-77
 Identities = 149/224 (66%), Positives = 178/224 (79%), Gaps = 1/224 (0%)








 
Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain 
and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 100.0% aligned
Score =  212 bits (540), Expect = 3e-56
Identities = 98/230 (42%), Positives = 140/230 (60%), Gaps = 7/230 (3%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues,  99.1% aligned
Score =  109 bits (273), Expect = 4e-25
Identities = 50/112 (44%), Positives = 73/112 (65%), Gaps = 1/112 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7059




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24201




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37388




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3528_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3528
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5626
                           PA1437_tr
                           translation of PA1437
                           229
                           99.99
                           99.99
                           0
                           1147.0
     

     
     
156829
                           gb|AAG04826.1|AE004573_5
                           (AE004573) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           229
                           99.99
                           99.99
                           0
                           1147.0
     

     
     
156830
                           gb|AAO54831.1|
                           (AE016860) DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           229
                           74.67
                           87.33
                           4
                           869.0
     

     
     
156835
                           emb|CAC90814.1|
                           (AJ414151) transcriptional activator [Yersinia pestis CO92]
                           230
                           64.78
                           78.26
                           1
                           729.0
     

     
     
156834
                           gb|AAM85866.1|AE013833_4
                           (AE013833) putative 2-component transcriptional regulator [Yersinia pestis KIM]
                           230
                           64.78
                           78.26
                           1
                           729.0
     

     






      

          
GC ORFID: 46530How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1437Glimmer Score: 

          
Start: 876861Stop: 877550

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1437 translation of PA1437Homolog Bit Score 446.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 336.0), t_PA2809 (ORF: BLASTX 269.0), t_PA4885 (ORF: BLASTX 265.0), t_PA2523 (ORF: BLASTX 255.0), psyr_15may02_Scaffold9_revised_gene8194 (ORF: BLASTX 251.0), psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 247.0), t_PA4381 (ORF: BLASTX 182.0), psyr_15may02_Scaffold11_revised_gene1928 (ORF: BLASTX 173.0), psyr_15may02_Scaffold12_revised_gene2057 (ORF: BLASTX 172.0), psyr_15may02_Scaffold16_revised_gene2699 (ORF: BLASTX 154.0), t_PA0756 (ORF: BLASTX 145.0), t_PA1437 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGGTACTGATTGTCGAGGACGAGGCGAAGACGGCGGACTACCTGAACCGTGGCCTCAGTGAACAGGGG 
TTCACCGTGGACCTGGCGGACAACGGCATCGACGGTCGCCACCTGGCGCTCCATGGCGAGTACGACGTGATC 
GTGCTCGACGTGATGCTGCCGGGCGTCGACGGCTACGGCGTTCTGCGGGCGTTGCGCGAGCGGCGGCAGACC 
CCGGTGATCATGCTCACCGCGCGCGAGCGCGTGGAAGACCGGGTGCGCGGGCTGCGCGAGGGCGCTGACGAC 
TACCTGATCAAGCCGTTCTCCTTCCTCGAACTGGTTGCCCGCCTGCAGGCCCTGACCCGGCGCGGCGGCAAC 
CACGAAAGCCATTCGCAGATGCGCATCGCCGACCTGTCCATCGACCTGCTCAGCCGCAAGGTCTTCCGCGGC 
AACACTCGCCTGGAGCTGACTGCCAAGGAGTACGCGCTGCTCTGCGTGCTGGCCCAGCGCAGCGGCGAGATC 
CTATCGAAGACGGCGATCGCCGAACTGGTCTGGGACATCAACTTCGATACCGATACCAATGTCGTGGAGGTG 
GCGATCAAGCGCCTGCGCGCCAAGCTCGACGGTCCGTTCGAGAACAAGCTGCTGCATACCATCCGGGGCATG 
GGCTACGTCCTGGAGAACCGTGCGCTGGCGGAGTCGGGCTGA