ViewGene
Locus Name:
GeneID:
Location:

GeneID:3527
TrivialName: PA14_49180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49180
PAO1 Ortholog Locus:PA1179
Sequence Length:678
Protein Length:225
Start: 4371325
Stop: 4370648
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04568.1|AE004548_2 (AE004548) two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
Identities = 225/225 (100%), Positives = 225/225 (100%)
Sequence:
ATGAAACTGCTGGTAGTGGAAGACGAGGCGCTGTTGCGCCACCACCTCTATACCCGCCTGGGTGAACAGGGG
CACGTGGTGGACGCGGTACCGGATGCCGAGGAAGCCCTCTACCGGGTCAGCGAATACCACCACGACCTGGCG
GTGATCGACCTCGGCCTGCCGGGCATGAGCGGCCTGGACCTGATCCGCGAGCTGCGTTCGCAGGGCAAGTCC
TTCCCGATCCTGATCCTCACTGCCCGCGGCAACTGGCAGGACAAGGTCGAAGGCCTGGCCGCCGGGGCCGAC
GACTACGTGGTCAAGCCGTTCCAGTTCGAGGAACTGGAAGCGCGCCTGAACGCGCTGCTGCGACGCTCCTCG
GGGTTCGTCCAGTCGACCATCGAGGCCGGCCCCCTGGTCCTCGACCTGAACCGCAAGCAGGCGCTGGTCGAG
GAGCAACCGGTGGCGCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGGCATCACCAGCAGGTG
GTGGCCAAGGAACGCCTGATGGAACAGCTCTATCCCGACGACGAGGAGCGCGACGCCAACGTCATCGAGGTG
CTGGTCGGCCGCCTGCGGCGCAAGCTGGAGGCCTGCGGCGGCTTCAAGCCGATCGATACGGTGCGCGGCCAG
GGCTACCTGTTCACCGAGCGCTGCCGGTGA
Translation:
MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSGLDLIRELRSQGKS
FPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFVQSTIEAGPLVLDLNRKQALVE
EQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYPDDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQ
GYLFTERCR*
AnnotationID:3535GeneID:3527
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 14:02:03
Gene Name:phoP
Confidence Code:1
GeneProduct:two-component response regulator PhoP
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745, COG0745, COG2197, mor
Secondary Functional Category(ies):Transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:
Two-component System.
Homology:






 
Structural Features:






   
Genomic Context:
Adjoining gene is homologous to phoQ.






   
Comment:


















    ReferenceID:7057




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16962




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search






    
Reference Type:Blast (text/plain)







    
Data:phoP.cgi


    		




 
URL:

















    ReferenceID:16963




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
CDART (Conserved Domain Architecture Retrieval Tool)






    
Reference Type:Blast (text/plain)







    
Data:phoP_CDART.cgi


    		




 
URL:

















    ReferenceID:24199




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3527
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5621
                           PA1179_tr
                           translation of PA1179
                           225
                           99.99
                           99.99
                           0
                           1148.0
     

     
     
156674
                           gb|AAG04568.1|AE004548_2
                           (AE004548) two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
                           225
                           99.99
                           99.99
                           0
                           1148.0
     

     
     
156675
                           gb|AAN66810.1|AE016310_2
                           (AE016778) transcriptional regulatory protein PhoP [Pseudomonas putida KT2440]
                           225
                           86.66
                           92.00
                           0
                           995.0
     

     
     
156676
                           gb|AAO55199.1|
                           (AE016861) transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           225
                           83.11
                           91.55
                           0
                           959.0
     

     
     
156678
                           gb|AAM43164.1|
                           (AE012514) two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           229
                           55.02
                           70.74
                           6
                           627.0
     

     






      

          
GC ORFID: 46529How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1179Glimmer Score: 

          
Start: 582583Stop: 583260

          
Length: 678


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1179 translation of PA1179Homolog Bit Score 446.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6444 (ORF: BLASTX 374.0), psyr_15may02_Scaffold17_revised_gene2789 (ORF: BLASTX 201.0), t_PA2657 (ORF: BLASTX 188.0), t_PA0756 (ORF: BLASTX 167.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 166.0), psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 159.0), t_PA2809 (ORF: BLASTX 158.0), t_PA4776 (ORF: BLASTX 145.0), t_PA1179 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACTGCTGGTAGTGGAAGACGAGGCGCTGTTGCGCCACCACCTCTATACCCGCCTGGGTGAACAGGGG 
CACGTGGTGGACGCGGTACCGGATGCCGAGGAAGCCCTCTACCGGGTCAGCGAATACCACCACGACCTGGCG 
GTGATCGACCTCGGCCTGCCGGGCATGAGCGGCCTGGACCTGATCCGCGAGCTGCGTTCGCAGGGCAAGTCC 
TTCCCGATCCTGATCCTCACTGCCCGCGGCAACTGGCAGGACAAGGTCGAAGGCCTGGCCGCCGGGGCCGAC 
GACTACGTGGTCAAGCCGTTCCAGTTCGAGGAACTGGAAGCGCGCCTGAACGCGCTGCTGCGACGCTCCTCG 
GGGTTCGTCCAGTCGACCATCGAGGCCGGCCCCCTGGTCCTCGACCTGAACCGCAAGCAGGCGCTGGTCGAG 
GAGCAACCGGTGGCGCTGACCGCCTACGAATACCGCATCCTCGAATACCTCATGCGGCATCACCAGCAGGTG 
GTGGCCAAGGAACGCCTGATGGAACAGCTCTATCCCGACGACGAGGAGCGCGACGCCAACGTCATCGAGGTG 
CTGGTCGGCCGCCTGCGGCGCAAGCTGGAGGCCTGCGGCGGCTTCAAGCCGATCGATACGGTGCGCGGCCAG 
GGCTACCTGTTCACCGAGCGCTGCCGGTGA