ViewGene
Locus Name:
GeneID:
Location:

GeneID:3526
TrivialName: PA14_59960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59960
PAO1 Ortholog Locus:
Sequence Length:660
Protein Length:219
Start: 5340274
Stop: 5340933
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84147.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 219/219 (100%), Positives = 219/219 (100%)
Sequence:
GTGAGACTCTTGAAGGGCGGCTGGGCAGCCAAACGATTTCAAGGTCCCGCCCTGCCCTGGGCGGGGCTGCTG
CTGGTCTTGCTGGCTGCATCCGCCGTAGGGGTAGAGCTTCTGGTGAAGGGCCTGCCAGCCAACCACAGCCTC
TACGGCGATGCGAAAGCGCGCTGGACGATCAATGAATACGCCGACCTGGAGTGCCCCTTCTGCAAGGTCTAC
ACCCCGCGGCTTAAGCGCTGGGTAGACAGCCATCCGGACGTGAACCTGGTTTGGCGCCATCTTCCCCTGCAG
ATGCATGGCGAGGCGGCCCGCCACCAGGCTCGCCTGGTGGAGTGCGCGGGGATCCAAGGCGGCGCCAAAGCC
TTCTGGAGCGCTATCGATGCGATCTTCGCTCAGTCGGCCGGCAACGGGGGCGGGCTGCCTGGCGGCACATTG
GACTTTCCTGAACTGGACCAGGCTCGACTGGAGAAATGTGCGAAAGACAACGAACTTATTGACTCAGATATC
AAGTTGGACATCGACATTGCACGGTCGAAGGGCATTACAGCGACCCCGACCCTCGTCATCCGGGACAACCAG
ACGGGACGAAGCGTGAAGCTTGAAGGCATGGCCGACGAGACCACGTTGCTGTCGGCGATAGACTGGCTAGCC
AAGGATCTCTAG
Translation:
MRLLKGGWAAKRFQGPALPWAGLLLVLLAASAVGVELLVKGLPANHSLYGDAKARWTINEYADLECPFCKVY
TPRLKRWVDSHPDVNLVWRHLPLQMHGEAARHQARLVECAGIQGGAKAFWSAIDAIFAQSAGNGGGLPGGTL
DFPELDQARLEKCAKDNELIDSDIKLDIDIARSKGITATPTLVIRDNQTGRSVKLEGMADETTLLSAIDWLA
KDL*
AnnotationID:3534GeneID:3526
AnnotatorUID: danlee
Modification Date/Time: 2005-08-24 15:03:06
Gene Name:
Confidence Code:3
GeneProduct:Putative protein-disulfide isomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1651, pfam01323
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
RL020,CP83






 
Structural Features:
COG1651, DsbG, Protein-disulfide isomerase
[Posttranslational modification, protein turnover,
chaperones], CD-Length = 244 residues, only  70.5% aligned,
Score = 81.8 bits (201), Expect = 1e-16






   
Genomic Context:






   
Comment:
the ORF has been reported to be related to pathogensis.



















    ReferenceID:14873




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17076




  
Author/Investigator(s):
        





  
Title:
        CDD-search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:NCBI CD-3526.htm


    		




 
URL:

















    ReferenceID:24197




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3526
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
156670
                           gb|AAP84147.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           219
                           99.54
                           99.99
                           0
                           1148.0
     

     
     
5620
                           PA0982_tr
                           translation of PA0982
                           219
                           75.34
                           78.08
                           37
                           864.0
     

     
     
156671
                           gb|AAG04371.1|AE004531_8
                           (AE004531) hypothetical protein PA0982 [Pseudomonas aeruginosa PAO1]
                           219
                           75.34
                           78.08
                           37
                           864.0
     

     
     
156672
                           gb|AAO54392.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           251
                           38.24
                           49.80
                           49
                           427.0
     

     
     
156673
                           gb|AAM37128.1|
                           (AE011864) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           257
                           35.79
                           44.74
                           59
                           379.0
     

     






      

          
GC ORFID: 46528How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL020Glimmer Score: 

          
Start: 4603953Stop: 4604612

          
Length: 660


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RL020 219 Homolog: PA0982 / Hypothetical protein / P.aeruginosa / PA01 (AAG04371) translation of RL020Homolog Bit Score 447.0

          
Other Homologs:  t_PA0982 (ORF: BLASTX 339.0), psyr_15may02_Scaffold10_revised_gene1646 (ORF: BLASTX 180.0), t_RL020 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGACTCTTGAAGGGCGGCTGGGCAGCCAAACGATTTCAAGGTCCCGCCCTGCCCTGGGCGGGGCTGCTG 
CTGGTCTTGCTGGCTGCATCCGCCGTAGGGGTAGAGCTTCTGGTGAAGGGCCTGCCAGCCAACCACAGCCTC 
TACGGCGATGCGAAAGCGCGCTGGACGATCAATGAATACGCCGACCTGGAGTGCCCCTTCTGCAAGGTCTAC 
ACCCCGCGGCTTAAGCGCTGGGTAGACAGCCATCCGGACGTGAACCTGGTTTGGCGCCATCTTCCCCTGCAG 
ATGCATGGCGAGGCGGCCCGCCACCAGGCTCGCCTGGTGGAGTGCGCGGGGATCCAAGGCGGCGCCAAAGCC 
TTCTGGAGCGCTATCGATGCGATCTTCGCTCAGTCGGCCGGCAACGGGGGCGGGCTGCCTGGCGGCACATTG 
GACTTTCCTGAACTGGACCAGGCTCGACTGGAGAAATGTGCGAAAGACAACGAACTTATTGACTCAGATATC 
AAGTTGGACATCGACATTGCACGGTCGAAGGGCATTACAGCGACCCCGACCCTCGTCATCCGGGACAACCAG 
ACGGGACGAAGCGTGAAGCTTGAAGGCATGGCCGACGAGACCACGTTGCTGTCGGCGATAGACTGGCTAGCC 
AAGGATCTCTAG