ViewGene

Locus Name:
GeneID:
Location:

GeneID:3525
TrivialName: PA14_06870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06870
PAO1 Ortholog Locus:PA0527
Sequence Length:684
Protein Length:227
Start: 596637
Stop: 595954
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03916.1|AE004489_8 (AE004489) transcriptional regulator Dnr [Pseudomonas aeruginosa PAO1]
Identities = 226/227 (99%), Positives = 226/227 (99%)
Sequence:
ATGGAATTCCAGCGCGTCCACCAGCAGTTGCTGCAAAGCCACCACCTGTTCGAACCGCTTTCTCCCGTCCAG
CTCCAGGAACTGCTCGCCAGCAGCGACCTGGTCAACCTCGACAAGGGCGCCTACGTGTTCCGCCAGGGCGAG
CCGGCGCACGCCTTCTACTACCTGATTTCCGGCTGCGTGAAGATCTACCGGCTGACCCCGGAAGGCCAGGAG
AAGATTCTCGAAGTGACCAACGAACGCAACACCTTCGCCGAGGCGATGATGTTCATGGACACCCCGAACTAC
GTGGCCACCGCCCAGGCCGTGGTGCCCAGCCAGCTGTTCCGTTTCTCCAACAAGGCCTACCTGCGCCAGTTG
CAGGACAACACCCCGTTGGCCCTGGCCCTGCTGGCCAAGCTCAGCACCCGCCTGCACCAGCGCATCGACGAG
ATCGAGACGCTTTCCCTGAAGAACGCCACCCACCGCGTGGTGCGCTACCTGCTGACCCTCGCCGCCCACGCG
CCGGGGGAGAACTGCCGGGTGGAAATCCCGGTGGCCAAGCAACTGGTGGCCGGTCACCTGTCGATCCAGCCG
GAAACCTTCTCGCGGATCATGCACCGCCTCGGCGACGAGGGCATCATCCGCCTCGACGGCCGCGAAATCAGC
ATCCTCGACCGCGAACGCCTGGAGTGCTTCGAGTGA
Translation:
MEFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQE
KILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDE
IETLSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIRLDGREIS
ILDRERLECFE*
AnnotationID:3533GeneID:3525
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 12:12:30
Gene Name:dnr
Confidence Code:1
GeneProduct:transcriptional regulator Dnr
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0664,cd00038
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC14591.1| (AJ298925) DnrD protein [Pseudomonas stutzeri]
          Length = 227

 Score =  303 bits (776), Expect = 5e-82
 Identities = 154/227 (67%), Positives = 181/227 (79%)

Structural Features:
COG0664, Crp, cAMP-binding proteins - catabolite gene activator and 
regulatory subunit of cAMP-dependent protein kinases 
[Signal transduction mechanisms]
CD-Length = 214 residues, 100.0% aligned
Score =  123 bits (310), Expect = 1e-29
Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 4/215 (1%)

cd00038, CAP_ED, effector domain of the CAP family of transcription factors
CD-Length = 115 residues, 100.0% aligned
Score = 85.1 bits (210), Expect = 5e-18
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Genomic Context:
Comment:
ReferenceID:7053
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24195
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33797
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3525_cdd.html
URL:
ReferenceID:35298
Author/Investigator(s): Arai H, Igarashi Y, Kodama T.
Title: Expression of the nir and nor genes for denitrification of Pseudomonas aeruginosa requires a novel CRP/FNR-related transcriptional regulator, DNR, in addition to ANR.
PubMed: 7664887
MedLine:
Source:
FEBS Lett. 1995 Aug 28;371(1):73-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7664887
Homologs By Global Alignment
Gene ID:3525

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5619 PA0527_tr translation of PA0527 227 99.55 99.55 0 1149.0
156664 gb|AAG03916.1|AE004489_8 (AE004489) transcriptional regulator Dnr [Pseudomonas aeruginosa PAO1] 227 99.55 99.55 0 1149.0
156665 dbj|BAA08744.1| (D50019) DNR protein [Pseudomonas aeruginosa] 227 99.55 99.55 0 1149.0
156666 emb|CAC14591.1| (AJ298925) DnrD protein [Pseudomonas stutzeri] 227 67.84 79.73 0 776.0
156667 emb|CAB40903.1| (AJ131715) DnrD protein [Pseudomonas stutzeri] 227 67.84 79.73 0 776.0
GC ORFID: 46527How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0527Glimmer Score:
Start: 6397979Stop: 6397296
Length: 684
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0527 translation of PA0527Homolog Bit Score 447.0
Other Homologs: t_PA0527 (ORF: GLIMMER)
GC ORF Sequence
ATGGAATTCCAGCGCGTCCACCAGCAGTTGCTGCAAAGCCACCACCTGTTCGAACCGCTTTCTCCCGTCCAG
CTCCAGGAACTGCTCGCCAGCAGCGACCTGGTCAACCTCGACAAGGGCGCCTACGTGTTCCGCCAGGGCGAG
CCGGCGCACGCCTTCTACTACCTGATTTCCGGCTGCGTGAAGATCTACCGGCTGACCCCGGAAGGCCAGGAG
AAGATTCTCGAAGTGACCAACGAACGCAACACCTTCGCCGAGGCGATGATGTTCATGGACACCCCGAACTAC
GTGGCCACCGCCCAGGCCGTGGTGCCCAGCCAGCTGTTCCGTTTCTCCAACAAGGCCTACCTGCGCCAGTTG
CAGGACAACACCCCGTTGGCCCTGGCCCTGCTGGCCAAGCTCAGCACCCGCCTGCACCAGCGCATCGACGAG
ATCGAGACGCTTTCCCTGAAGAACGCCACCCACCGCGTGGTGCGCTACCTGCTGACCCTCGCCGCCCACGCG
CCGGGGGAGAACTGCCGGGTGGAAATCCCGGTGGCCAAGCAACTGGTGGCCGGTCACCTGTCGATCCAGCCG
GAAACCTTCTCGCGGATCATGCACCGCCTCGGCGACGAGGGCATCATCCGCCTCGACGGCCGCGAAATCAGC
ATCCTCGACCGCGAACGCCTGGAGTGCTTCGAGTGA