ViewGene
Locus Name:
GeneID:
Location:

GeneID:3523
TrivialName: PA14_05160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05160
PAO1 Ortholog Locus:PA0394
Sequence Length:693
Protein Length:230
Start: 451091
Stop: 450399
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03783.1|AE004476_13 (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 229/230 (99%), Positives = 229/230 (99%)
Sequence:
ATGTCCACGATAGCAGAGAATATTGCAAAGGTTGCCGCACGCATCCGTGAGGCAGCGCAAGCTGCGGGGCGC
GATCCGGCCACGGTCGGCCTGCTCGCCGTGAGCAAGACCAAGCCCGCCGCCGCGGTGCGCGAGGCGCACGCC
GCCGGCCTTCGCGACTTCGGCGAAAACTACCTGCAGGAGGCCCTCGGCAAGCAGGCCGAACTGGCCGACCTA
CCCTTGAACTGGCACTTCATCGGCCCCATCCAGTCGAACAAGACGCGGCCCATCGCCGAGCATTTCCAGTGG
GTGCACTCGGTGGACCGGTTGAAGATCGCGCAGCGCCTGTCGGAGCAACGCCCGGCCGGGCTGCCGCTCCTG
AATGTCTGCCTGCAGGTCAACGTCAGCGGCGAAGCCAGCAAGTCCGGCTGCGCCCCCGAGGACCTGCCGGCC
CTGGCCGAGGCCGTGAAGCAACTGCCCAACCTCCGATTGCGTGGCCTGATGGCCATCCCCGAACCCACCGCC
GAACGCGCCGCGCAACACGCCGCGTTCGCCCGCCTGCGCGAACTGCTGCTGGACCTGAACCTTGGCCTGGAC
ACCCTGTCCATGGGCATGAGCGACGACCTCGAGGCAGCCATCGGCGAAGGTGCGACCTGGGTCCGCATCGGT
ACCGCCCTGTTCGGCGCCCGCGACTACGGCGCGCCGGCTTCTTGA
Translation:
MSTIAENIAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADL
PLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPLLNVCLQVNVSGEASKSGCAPEDLPA
LAEAVKQLPNLRLRGLMAIPEPTAERAAQHAAFARLRELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIG
TALFGARDYGAPAS*
AnnotationID:3531GeneID:3523
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 07:07:40
Gene Name:
Confidence Code:3
GeneProduct:putative PLP dependent enzyme
Cell Localization:()
Synonyms:PA0394
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00635,COG0325
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd00635, YBL036c_PLPDEIII, PLP dependent enzymes class III (PLPDE_III).
CD-Length = 221 residues, 100.0% aligned
Score =  296 bits (760), Expect = 1e-81
Identities = 136/222 (61%), Positives = 162/222 (72%), Gaps = 5/222 (2%)

COG0325, Predicted enzyme with a TIM-barrel fold
CD-Length = 228 residues, 100.0% aligned
Score =  294 bits (755), Expect = 4e-81
Identities = 130/229 (56%), Positives = 161/229 (70%), Gaps = 6/229 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7049




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24191




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33712




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3523_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3523
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5617
                           PA0394_tr
                           translation of PA0394
                           230
                           99.56
                           99.56
                           0
                           1151.0
     

     
     
156472
                           gb|AAG03783.1|AE004476_13
                           (AE004476) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           230
                           99.56
                           99.56
                           0
                           1151.0
     

     
     
156473
                           gb|AAA25959.1|
                           (M55524) ORF 6; putative [Pseudomonas aeruginosa]
                           230
                           99.56
                           99.56
                           0
                           1151.0
     

     
     
156475
                           gb|AAO58474.1|
                           (AE016874) conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv. tomato str. DC3000]
                           230
                           78.26
                           85.21
                           2
                           899.0
     

     
     
156474
                           gb|AAN70659.1|AE016710_4
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           230
                           77.82
                           85.21
                           2
                           905.0
     

     






      

          
GC ORFID: 46525How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0394Glimmer Score: 

          
Start: 6252433Stop: 6251741

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0394 translation of PA0394Homolog Bit Score 447.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3718 (ORF: BLASTX 344.0), t_PA0394 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCACGATAGCAGAGAATATTGCAAAGGTTGCCGCACGCATCCGTGAGGCAGCGCAAGCTGCGGGGCGC 
GATCCGGCCACGGTCGGCCTGCTCGCCGTGAGCAAGACCAAGCCCGCCGCCGCGGTGCGCGAGGCGCACGCC 
GCCGGCCTTCGCGACTTCGGCGAAAACTACCTGCAGGAGGCCCTCGGCAAGCAGGCCGAACTGGCCGACCTA 
CCCTTGAACTGGCACTTCATCGGCCCCATCCAGTCGAACAAGACGCGGCCCATCGCCGAGCATTTCCAGTGG 
GTGCACTCGGTGGACCGGTTGAAGATCGCGCAGCGCCTGTCGGAGCAACGCCCGGCCGGGCTGCCGCTCCTG 
AATGTCTGCCTGCAGGTCAACGTCAGCGGCGAAGCCAGCAAGTCCGGCTGCGCCCCCGAGGACCTGCCGGCC 
CTGGCCGAGGCCGTGAAGCAACTGCCCAACCTCCGATTGCGTGGCCTGATGGCCATCCCCGAACCCACCGCC 
GAACGCGCCGCGCAACACGCCGCGTTCGCCCGCCTGCGCGAACTGCTGCTGGACCTGAACCTTGGCCTGGAC 
ACCCTGTCCATGGGCATGAGCGACGACCTCGAGGCAGCCATCGGCGAAGGTGCGACCTGGGTCCGCATCGGT 
ACCGCCCTGTTCGGCGCCCGCGACTACGGCGCGCCGGCTTCTTGA