ViewGene
Locus Name:
GeneID:
Location:

GeneID:3521
TrivialName: PA14_03580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03580
PAO1 Ortholog Locus:PA0275
Sequence Length:687
Protein Length:228
Start: 324975
Stop: 324289
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03664.1|AE004465_10 (AE004465) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 226/228 (99%), Positives = 227/228 (99%)
Sequence:
ATGAACGAGCGTACCGACTACCGTTCGCAACTCCAGGCCGGCCGCTGGTTCCAGGGTTTGCCGGAGGCCTTG
CAGACGCACCTGCTGGCACTCGCCCAACCGCGCCATTTGCCGCCGGGCCAGCGCCTGTTCGCCCGCGGCGAC
GCGCCCTGCGGACTGTACTGCGTGGTCGAGGGCGCGATCCGTATCAGCGCGGTCAGCGAGAACGGCAAGGAG
GCGCTGCTGATCCTGGTGGAAGCACCGCACTGGTTCGGCGAGATCGCCCTGTTCGACGGCCAGGCGCGCACC
CACGACGCCTACGCCGAAGGCCACACCCAGCTACTCCAGGTACCGCAGGCGGCGCTGCTCGAACTGCTTCGC
CGCGAGCCGCATTACTGGCGCGACATGGCCCTGCTGATGAGCCACAAGCTGCGCCTGGCATTCATCGCCCTG
GAAGAGATGGCCCTGCTGCCGGCCGCGCAACGCCTGGCGCGGCGCCTGCTGATGCTCGCCGAGGGCTACGAC
AACAGCCGCAGCCGGCAGGTCCTGCACCTGCCGCAGGAACAGTTGGCATTGATGCTGTCGCTGTCGCGGCAG
ACCACCAACCAAATCCTCAAGGACCTCGAAGCCCAGGGCATCCTCCAGCTCAGCTACGGCGGCATCGAGATC
CTCGACCTCGCCGGCCTGCGCGCGGCCACCCACGGCTGA
Translation:
MNERTDYRSQLQAGRWFQGLPEALQTHLLALAQPRHLPPGQRLFARGDAPCGLYCVVEGAIRISAVSENGKE
ALLILVEAPHWFGEIALFDGQARTHDAYAEGHTQLLQVPQAALLELLRREPHYWRDMALLMSHKLRLAFIAL
EEMALLPAAQRLARRLLMLAEGYDNSRSRQVLHLPQEQLALMLSLSRQTTNQILKDLEAQGILQLSYGGIEI
LDLAGLRAATHG*
AnnotationID:3529GeneID:3521
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 05:05:08
Gene Name:
Confidence Code:3
GeneProduct:putative putative transcriptional regulator
Cell Localization:()
Synonyms:PA0275
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0664,cd00038
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17956.1| (AL646081) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 239

 Score =  238 bits (606), Expect = 3e-62
 Identities = 127/224 (56%), Positives = 158/224 (70%), Gaps = 2/224 (0%)








 
Structural Features:
COG0664, Crp, cAMP-binding proteins - catabolite gene activator and 
regulatory subunit of cAMP-dependent protein kinases 
[Signal transduction mechanisms]
CD-Length = 214 residues,  98.6% aligned
Score =  125 bits (314), Expect = 4e-30
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 3/211 (1%)

cd00038, CAP_ED, effector domain of the CAP family of transcription factors
CD-Length = 115 residues, 100.0% aligned
Score = 83.9 bits (207), Expect = 1e-17
Identities = 30/115 (26%), Positives = 54/115 (46%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7045




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24187




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33630




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3521_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3521
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5615
                           PA0275_tr
                           translation of PA0275
                           228
                           99.12
                           99.56
                           0
                           1150.0
     

     
     
156441
                           gb|AAG03664.1|AE004465_10
                           (AE004465) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           228
                           99.12
                           99.56
                           0
                           1150.0
     

     
     
156442
                           emb|CAD17956.1|
                           (AL646081) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           239
                           53.13
                           66.52
                           11
                           602.0
     

     






      

          
GC ORFID: 46523How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0275Glimmer Score: 

          
Start: 6126316Stop: 6125630

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0275 translation of PA0275Homolog Bit Score 447.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3164 (ORF: BLASTX 153.0), t_PA0275 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGAGCGTACCGACTACCGTTCGCAACTCCAGGCCGGCCGCTGGTTCCAGGGTTTGCCGGAGGCCTTG 
CAGACGCACCTGCTGGCACTCGCCCAACCGCGCCATTTGCCGCCGGGCCAGCGCCTGTTCGCCCGCGGCGAC 
GCGCCCTGCGGACTGTACTGCGTGGTCGAGGGCGCGATCCGTATCAGCGCGGTCAGCGAGAACGGCAAGGAG 
GCGCTGCTGATCCTGGTGGAAGCACCGCACTGGTTCGGCGAGATCGCCCTGTTCGACGGCCAGGCGCGCACC 
CACGACGCCTACGCCGAAGGCCACACCCAGCTACTCCAGGTACCGCAGGCGGCGCTGCTCGAACTGCTTCGC 
CGCGAGCCGCATTACTGGCGCGACATGGCCCTGCTGATGAGCCACAAGCTGCGCCTGGCATTCATCGCCCTG 
GAAGAGATGGCCCTGCTGCCGGCCGCGCAACGCCTGGCGCGGCGCCTGCTGATGCTCGCCGAGGGCTACGAC 
AACAGCCGCAGCCGGCAGGTCCTGCACCTGCCGCAGGAACAGTTGGCATTGATGCTGTCGCTGTCGCGGCAG 
ACCACCAACCAAATCCTCAAGGACCTCGAAGCCCAGGGCATCCTCCAGCTCAGCTACGGCGGCATCGAGATC 
CTCGACCTCGCCGGCCTGCGCGCGGCCACCCACGGCTGA