ViewGene
Locus Name:
GeneID:
Location:

GeneID:3520
TrivialName: PA14_72700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72700
PAO1 Ortholog Locus:PA5509
Sequence Length:669
Protein Length:222
Start: 6474204
Stop: 6474872
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08894.1|AE004963_7 (AE004963) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 219/222 (98%), Positives = 220/222 (99%)
Sequence:
GTGGTCCTGGTCTGCGAGCACGCCAGCCGGCACATCCCGCTGGAGTTGCAGCGCCTCGGCCTGGACCAGGCC
GCGGCGGAAGAACACATCGCCTGGGATATCGGCGCCCTGGCGCTGGCCGAAGAGCTTTCCCGGCGGCTCGAC
GCGCCATTGCTGGCGGCCGGCTACTCGCGCCTGCTGATCGACCTGAACCGACCGCTGGAGGCACCCGACAGC
ATTCCGCCGCACAGCGAGATCTACCCGGTTCCCGGCAACCGCGAGCTGTCCGAGACGGTGCGCCGCTATCGC
CAGGATTGCCTGTTCCATCCGTTCCACCAGCGCCTGACGCAACTGCTCGACGAGCGCCAGGCCGCCGGCGTG
CCGACCCGCGTGGTCGGCGTGCACAGTTTTACCCCGGTGTACCACGGCAGACCCCGCCCGCTGGTTGCCGGG
GTGCTTTATCGCAACGCCGGCGCCTACGCCGGGCGCATCCTCGACGGTTTGCGCCGGCACGGCCTGGAAGTC
GCCGGCAACCAGCCCTATGCGATCGACCCGGCGGAAGACACTACCGTTCCGGTGCATGGCGACGCACGCGGT
CTGGAAGCGGTGCTGCTGGAGATCCGCAACGATGGATTGCGCACGCCGGATGCGGTGAGCGCCTGGGCCGAG
CGTCTGTATCCCTGGCTCTGA
Translation:
MVLVCEHASRHIPLELQRLGLDQAAAEEHIAWDIGALALAEELSRRLDAPLLAAGYSRLLIDLNRPLEAPDS
IPPHSEIYPVPGNRELSETVRRYRQDCLFHPFHQRLTQLLDERQAAGVPTRVVGVHSFTPVYHGRPRPLVAG
VLYRNAGAYAGRILDGLRRHGLEVAGNQPYAIDPAEDTTVPVHGDARGLEAVLLEIRNDGLRTPDAVSAWAE
RLYPWL*
AnnotationID:3528GeneID:3520
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:50
Gene Name:
Confidence Code:3
GeneProduct:putative N-formylglutamate amidohydrolase
Cell Localization:()
Synonyms:PA5509
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3931,pfam05013
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3931, COG3931, Predicted N-formylglutamate amidohydrolase 
[Amino acid transport and metabolism]
CD-Length = 263 residues,  84.8% aligned
Score =  292 bits (750), Expect = 2e-80
Identities = 121/223 (54%), Positives = 141/223 (63%), Gaps = 1/223 (0%)

pfam05013, FGase, N-formylglutamate amidohydrolase.
CD-Length = 222 residues,  98.6% aligned
Score =  178 bits (452), Expect = 6e-46
Identities = 91/219 (41%), Positives = 115/219 (52%), Gaps = 12/219 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14871




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24185




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33247




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3520_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3520
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5614
                           PA5509_tr
                           translation of PA5509
                           222
                           98.64
                           99.09
                           0
                           1149.0
     

     
     
156427
                           gb|AAG08894.1|AE004963_7
                           (AE004963) hypothetical protein PA5509 [Pseudomonas aeruginosa PAO1]
                           222
                           98.19
                           99.09
                           0
                           1146.0
     

     
     
156432
                           gb|AAM35798.1|
                           (AE011722) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           242
                           39.66
                           52.47
                           20
                           433.0
     

     
     
156430
                           gb|AAL53797.1|
                           (AE009691) Hypothetical Cytosolic Protein [Brucella melitensis 16M]
                           257
                           38.52
                           50.97
                           37
                           449.0
     

     
     
156439
                           dbj|BAB16178.1|
                           (AP002086) similar to orf3 gene in Methylobacterium extorquens [Rhizobium rhizogenes] [Agrobacterium rhizogenes]
                           265
                           37.73
                           48.67
                           46
                           379.0
     

     






      

          
GC ORFID: 46522How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5509Glimmer Score: 

          
Start: 5737893Stop: 5738561

          
Length: 669


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5509 translation of PA5509Homolog Bit Score 447.0

          
Other Homologs:  t_PA5509 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTCCTGGTCTGCGAGCACGCCAGCCGGCACATCCCGCTGGAGTTGCAGCGCCTCGGCCTGGACCAGGCC 
GCGGCGGAAGAACACATCGCCTGGGATATCGGCGCCCTGGCGCTGGCCGAAGAGCTTTCCCGGCGGCTCGAC 
GCGCCATTGCTGGCGGCCGGCTACTCGCGCCTGCTGATCGACCTGAACCGACCGCTGGAGGCACCCGACAGC 
ATTCCGCCGCACAGCGAGATCTACCCGGTTCCCGGCAACCGCGAGCTGTCCGAGACGGTGCGCCGCTATCGC 
CAGGATTGCCTGTTCCATCCGTTCCACCAGCGCCTGACGCAACTGCTCGACGAGCGCCAGGCCGCCGGCGTG 
CCGACCCGCGTGGTCGGCGTGCACAGTTTTACCCCGGTGTACCACGGCAGACCCCGCCCGCTGGTTGCCGGG 
GTGCTTTATCGCAACGCCGGCGCCTACGCCGGGCGCATCCTCGACGGTTTGCGCCGGCACGGCCTGGAAGTC 
GCCGGCAACCAGCCCTATGCGATCGACCCGGCGGAAGACACTACCGTTCCGGTGCATGGCGACGCACGCGGT 
CTGGAAGCGGTGCTGCTGGAGATCCGCAACGATGGATTGCGCACGCCGGATGCGGTGAGCGCCTGGGCCGAG 
CGTCTGTATCCCTGGCTCTGA