ViewGene
Locus Name:
GeneID:
Location:

GeneID:3519
TrivialName: PA14_68750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68750
PAO1 Ortholog Locus:PA5205
Sequence Length:702
Protein Length:233
Start: 6132004
Stop: 6132705
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08590.1|AE004933_6 (AE004933) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 232/233 (99%), Positives = 233/233 (100%)
Sequence:
ATGAGCGAATACTTCCATCACGTCCTGGTCGGCCTGCTCGCCGTGCTCCCGGTAGCCAACCCGCTGACCAGC
GTCTCGCTGCTGCTTGGCCTCGGCGGCAGCCTACCGCCGGCGGAGCGCAACCGGCAGATATTCAAGGCCAGC
CTCTACGTGGCGCTGATCATGCTGGTCAGCTTCTACGGCGGCAGCCTGGTGATGCAGGTGTTCGGCATCTCC
ATTCCCGGCCTGCGCATCGCCGGCGGGCTGATCGTCGCCTATATCGGCTTCACCATGCTGTTCCCCGCCACC
ACGCCGGACGAGACCGAAGTCCAGCACGACCTGCTGTCGGACGAGGAAAAGATCACCCCGCACTTCCGCGAC
CTGTCCTTCGTTCCGCTGGCCCTGCCGGGTACCGCGGGGCCGGGGACCATCGCCCTGGTGGTCAGCTCGGCG
TCGACGCTGCAATCCACCTACGGAAGCATTCCGCTGTTCATCCACCTCGCGGCGATCACCGTCACCCTGCTC
ACCGCGCTGATCTTCTGGATCGCCCTGCAAAGCTCCGGGCGCATCATGAAGTTCCTCGGCGAATCCGGGATC
GACGCCATCTCGCGAGTGGTCGGCTTCCTGCTGGTGGCGATGGGCGTGCAGTTCGTCATCAACGGCGGCTTC
GAGCTGGTCGCCGGCCACGCCGCGCTTCAGTCGGCGGCGGGCGTCAGGCAGTAA
Translation:
MSEYFHHVLVGLLAVLPVANPLTSVSLLLGLGGSLPPAERNRQIFKASLYVALIMLVSFYGGSLVMQVFGIS
IPGLRIAGGLIVAYIGFTMLFPATTPDETEVQHDLLSDEEKITPHFRDLSFVPLALPGTAGPGTIALVVSSA
STLQSTYGSIPLFIHLAAITVTLLTALIFWIALQSSGRIMKFLGESGIDAISRVVGFLLVAMGVQFVINGGF
ELVAGHAALQSAAGVRQ*
AnnotationID:3527GeneID:3519
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:ydeB, marC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2095
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7041




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17030




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA5205_CDS.cgi


    		




 
URL:

















    ReferenceID:24183




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3519
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5613
                           PA5205_tr
                           translation of PA5205
                           233
                           99.57
                           99.99
                           0
                           1150.0
     

     
     
156405
                           gb|AAG08590.1|AE004933_6
                           (AE004933) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           233
                           99.57
                           99.99
                           0
                           1150.0
     

     
     
156406
                           emb|CAE33619.1|
                           (BX640446) putative multiple antibiotic resistance protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           242
                           57.43
                           71.07
                           18
                           670.0
     

     
     
156407
                           emb|CAE38098.1|
                           (BX640431) putative multiple antibiotic resistance protein [Bordetella parapertussis]
                           242
                           57.43
                           71.07
                           18
                           670.0
     

     
     
156422
                           dbj|BAB35559.1|
                           (AP002557) hypothetical protein [Escherichia coli O157:H7]
                           239
                           49.79
                           67.36
                           24
                           555.0
     

     






      

          
GC ORFID: 46521How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5205Glimmer Score: 

          
Start: 5395690Stop: 5396391

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5205 translation of PA5205Homolog Bit Score 447.0

          
Other Homologs:  t_PA5205 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAATACTTCCATCACGTCCTGGTCGGCCTGCTCGCCGTGCTCCCGGTAGCCAACCCGCTGACCAGC 
GTCTCGCTGCTGCTTGGCCTCGGCGGCAGCCTACCGCCGGCGGAGCGCAACCGGCAGATATTCAAGGCCAGC 
CTCTACGTGGCGCTGATCATGCTGGTCAGCTTCTACGGCGGCAGCCTGGTGATGCAGGTGTTCGGCATCTCC 
ATTCCCGGCCTGCGCATCGCCGGCGGGCTGATCGTCGCCTATATCGGCTTCACCATGCTGTTCCCCGCCACC 
ACGCCGGACGAGACCGAAGTCCAGCACGACCTGCTGTCGGACGAGGAAAAGATCACCCCGCACTTCCGCGAC 
CTGTCCTTCGTTCCGCTGGCCCTGCCGGGTACCGCGGGGCCGGGGACCATCGCCCTGGTGGTCAGCTCGGCG 
TCGACGCTGCAATCCACCTACGGAAGCATTCCGCTGTTCATCCACCTCGCGGCGATCACCGTCACCCTGCTC 
ACCGCGCTGATCTTCTGGATCGCCCTGCAAAGCTCCGGGCGCATCATGAAGTTCCTCGGCGAATCCGGGATC 
GACGCCATCTCGCGAGTGGTCGGCTTCCTGCTGGTGGCGATGGGCGTGCAGTTCGTCATCAACGGCGGCTTC 
GAGCTGGTCGCCGGCCACGCCGCGCTTCAGTCGGCGGCGGGCGTCAGGCAGTAA