ViewGene
Locus Name:
GeneID:
Location:

GeneID:3517
TrivialName: PA14_16550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16550
PAO1 Ortholog Locus:PA3699
Sequence Length:714
Protein Length:237
Start: 1417317
Stop: 1418030
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07087.1|AE004789_7 (AE004789) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 237/237 (100%), Positives = 237/237 (100%)
Sequence:
GTGTCCCGAGTAGCTCCCAGAGACAGCGCCGCGCAGGCCGCCAGCGCGGTAGCCGAAAGCGTTCGTTACCAG
GGCCGCAAGGCCAGCCGCCAGGGCAGCGAGCAGCGGCGCCAGGCGATTCTCGATGCCGCCATGCGCCTGATC
GTCCGCGACGGCGTACGGGCCGTGCGCCACCGCGCGGTGGCCGCCGAGGCCCAGGTGCCGTTGTCGGCCACC
ACCTACTACTTCAAGGACATCGACGATCTCATCACCGACACCTTCGCCCTCTTCGTCGAGCGCAACGCAGAG
GCGCTGTCGGCGTTCTGGAGCAGCGTGGAGGGCGACCTCCAGGAGATGGCCGCGGTGCTGGCCGACGACCCC
GGCGCCCGTGGCTCGCTGGTGGAACGGATCGTCGAGCTGGCCGTGCAGTATGTCCAGGTCCAGCTCACCGAG
CGCCGCGAGCACCTGCTGGCCGAACAGGCCTTCCGCCAGGAGGCGTTGCTCAACCCGCGCCTGCGCGAACTG
GCCGATGCCCACCAGCGGATTCTCTCCCTCGGCGCCGTGCATTTCTTCCAGGTGCTCGGTTCCGGGCAGCCC
GAGCAGGACGCCAAGGTGTTGACGTCGATTATTCTGCAGATGGAATATCAGGGCCTCGTGGACGGGGTCGAG
CAACTGGCCGTGGACGAAATGCGCGCCATACTCAGACGGTACCTGAATCTGGTCATGGGCCTGTGA
Translation:
MSRVAPRDSAAQAASAVAESVRYQGRKASRQGSEQRRQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPLSAT
TYYFKDIDDLITDTFALFVERNAEALSAFWSSVEGDLQEMAAVLADDPGARGSLVERIVELAVQYVQVQLTE
RREHLLAEQAFRQEALLNPRLRELADAHQRILSLGAVHFFQVLGSGQPEQDAKVLTSIILQMEYQGLVDGVE
QLAVDEMRAILRRYLNLVMGL*
AnnotationID:3525GeneID:3517
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 11:11:24
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA3699
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55022.1| (AE016861) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 241

 Score =  265 bits (676), Expect = 2e-70
 Identities = 140/230 (60%), Positives = 176/230 (76%)

>gb|AAN67118.1|AE016341_1 (AE016779) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 238

 Score =  257 bits (656), Expect = 5e-68
 Identities = 138/235 (58%), Positives = 171/235 (72%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14869




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24179




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31851




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3517_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3517
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5611
                           PA3699_tr
                           translation of PA3699
                           237
                           99.99
                           99.99
                           0
                           1151.0
     

     
     
156391
                           gb|AAG07087.1|AE004789_7
                           (AE004789) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           237
                           99.57
                           99.99
                           0
                           1148.0
     

     
     
156392
                           gb|AAO55022.1|
                           (AE016861) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           243
                           57.61
                           72.42
                           8
                           672.0
     

     
     
156393
                           gb|AAN67118.1|AE016341_1
                           (AE016779) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           238
                           57.56
                           71.84
                           1
                           650.0
     

     






      

          
GC ORFID: 46519How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3699Glimmer Score: 

          
Start: 3536620Stop: 3535907

          
Length: 714


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3699 translation of PA3699Homolog Bit Score 447.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4591 (ORF: BLASTX 260.0), t_PA3699 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCCGAGTAGCTCCCAGAGACAGCGCCGCGCAGGCCGCCAGCGCGGTAGCCGAAAGCGTTCGTTACCAG 
GGCCGCAAGGCCAGCCGCCAGGGCAGCGAGCAGCGGCGCCAGGCGATTCTCGATGCCGCCATGCGCCTGATC 
GTCCGCGACGGCGTACGGGCCGTGCGCCACCGCGCGGTGGCCGCCGAGGCCCAGGTGCCGTTGTCGGCCACC 
ACCTACTACTTCAAGGACATCGACGATCTCATCACCGACACCTTCGCCCTCTTCGTCGAGCGCAACGCAGAG 
GCGCTGTCGGCGTTCTGGAGCAGCGTGGAGGGCGACCTCCAGGAGATGGCCGCGGTGCTGGCCGACGACCCC 
GGCGCCCGTGGCTCGCTGGTGGAACGGATCGTCGAGCTGGCCGTGCAGTATGTCCAGGTCCAGCTCACCGAG 
CGCCGCGAGCACCTGCTGGCCGAACAGGCCTTCCGCCAGGAGGCGTTGCTCAACCCGCGCCTGCGCGAACTG 
GCCGATGCCCACCAGCGGATTCTCTCCCTCGGCGCCGTGCATTTCTTCCAGGTGCTCGGTTCCGGGCAGCCC 
GAGCAGGACGCCAAGGTGTTGACGTCGATTATTCTGCAGATGGAATATCAGGGCCTCGTGGACGGGGTCGAG 
CAACTGGCCGTGGACGAAATGCGCGCCATACTCAGACGGTACCTGAATCTGGTCATGGGCCTGTGA