ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3516

TrivialName: PA14_29730

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_29730

PAO1 Ortholog Locus: PA2657

Sequence Length: 672

Protein Length: 223

Start: 2573895

Stop: 2574566

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06045.1|AE004694_8 (AE004694) probable two-component response regulator [Pseudomonas aeruginosa PAO1] Identities = 223/223 (100%), Positives = 223/223 (100%)

Sequence:

ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGC
TACGCGGTGGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGACCTGATC
ATTCTCGACCTCGGCCTGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGCCTGGGACTCGCG
ACTCCGGTGCTGATCCTCACCGCGCGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGAC
GACTATCTGACCAAGCCGTTCCATCCGGAAGAGTTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCAT
GGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGCGCCTGGACGAGCAGCGTCAGTGCGTGTGCCTG
AACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGCTATTTCATGCTGCACCCCGGCCAG
GTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGATTCCAACGTCATCGAG
GTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGGGCTACCGC
TACGCCGGGGTGGCCGCCGGATGA

Translation:

MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLA
TPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCL
NGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYR
YAGVAAG*

AnnotationID:3524 GeneID:3516

AnnotatorUID: diggins

Modification Date/Time: 2005-03-07 17:05:19

Gene Name:

Confidence Code: 3

GeneProduct: putative two-component response regulator

Cell Localization: ()

Synonyms: PA2657

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (28) Two-component regulatory systems

Alternate Gene Product Name: putative DNA-binding response regulator

Functional Category Confidence Code: 5

COGs: COG0745,cd00156

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO56859.1| (AE016868) DNA-binding response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 222

 Score =  384 bits (986), Expect = e-106
 Identities = 186/219 (84%), Positives = 200/219 (91%)

>gb|AAN67960.1|AE016428_8 (AE016782) DNA-binding response regulator [Pseudomonas putida
           KT2440]
          Length = 222

 Score =  375 bits (963), Expect = e-103
 Identities = 186/219 (84%), Positives = 196/219 (89%)

>gb|AAN57452.1|AE015880_11 (AE015880) DNA-binding response regulator [Shewanella oneidensis
           MR-1]
          Length = 220

 Score =  227 bits (579), Expect = 3e-59
 Identities = 115/217 (52%), Positives = 154/217 (70%), Gaps = 2/217 (0%)

Structural Features:

COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain 
and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 100.0% aligned
Score =  212 bits (540), Expect = 3e-56
Identities = 101/230 (43%), Positives = 134/230 (58%), Gaps = 10/230 (4%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  109 bits (275), Expect = 2e-25
Identities = 53/113 (46%), Positives = 71/113 (62%)

Genomic Context:

Comment:

ReferenceID:7035

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24177

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36356

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3516_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3516

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5604 PA2657_tr translation of PA2657 223 99.99 99.99 0 1150.0

156223 gb|AAG06045.1|AE004694_8 (AE004694) probable two-component response regulator [Pseudomonas aeruginosa PAO1] 223 99.99 99.99 0 1150.0

156224 gb|AAO56859.1| (AE016868) DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] 223 84.30 90.58 1 986.0

156225 gb|AAN67960.1|AE016428_8 (AE016782) DNA-binding response regulator [Pseudomonas putida KT2440] 223 83.40 87.89 1 960.0

156226 gb|AAN57452.1|AE015880_11 (AE015880) DNA-binding response regulator [Shewanella oneidensis MR-1] 224 51.33 68.75 5 580.0

GC ORFID: `46518`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2657`	Glimmer Score:
Start: `2380031`	Stop: `2379360`
Length: `672`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2657 translation of PA2657`	Homolog Bit Score `447.0`
Other Homologs: psyr_15may02_Scaffold17_revised_gene2789 (ORF: BLASTX 381.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 191.0), t_PA1179 (ORF: BLASTX 188.0), psyr_15may02_Scaffold5_revised_gene6444 (ORF: BLASTX 187.0), t_PA4776 (ORF: BLASTX 186.0), t_PA2809 (ORF: BLASTX 157.0), t_PA0756 (ORF: BLASTX 152.0), psyr_15may02_Scaffold10_revised_gene1701 (ORF: BLASTX 152.0), t_PA4885 (ORF: BLASTX 144.0), psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 140.0), psyr_15may02_Scaffold16_revised_gene2699 (ORF: BLASTX 137.0), t_PA2657 (ORF: GLIMMER)
GC ORF Sequence
ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGC TACGCGGTGGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGACCTGATC ATTCTCGACCTCGGCCTGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGCCTGGGACTCGCG ACTCCGGTGCTGATCCTCACCGCGCGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGAC GACTATCTGACCAAGCCGTTCCATCCGGAAGAGTTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCAT GGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGCGCCTGGACGAGCAGCGTCAGTGCGTGTGCCTG AACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGCTATTTCATGCTGCACCCCGGCCAG GTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGATTCCAACGTCATCGAG GTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGGGCTACCGC TACGCCGGGGTGGCCGCCGGATGA