ViewGene

Locus Name:
GeneID:
Location:

GeneID:3515
TrivialName: PA14_33420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33420
PAO1 Ortholog Locus:PA2419
Sequence Length:681
Protein Length:226
Start: 2941629
Stop: 2940949
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05807.1|AE004669_4 (AE004669) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 225/226 (99%), Positives = 226/226 (100%)
Sequence:
ATGAGCGCTCCCGCCAACTTCAACGGCCAGACCCCGAAGATCGATCCGGCCAACGCCGCCATGTTGCTGATC
GACCACCAGAGCGGCCTGTTCCAGACGGTCAAGGACATGCCGATGACCGAACTGCGCGCCAACGCCACCACC
CTGGCCAAGGTCGCCACCCTGGCGAAGATCCCGGTGATCACCACCGCCTCGGTACCGCAGGGCCCCAACGGC
CCGCTGATCCCGGAGATCCACGAGGCCGCGCCGCACGCCCAGTACGTCGCGCGCAAGGGTGAGATCAATGCC
TGGGACAACCCGGAATTCGTCGCCGCGGTGAAGGCCACCGGCAAGAAGCAACTGATCATCGCCGGCACCATC
ACCAGCGTGTGCATGGCCTTCCCCAGCATCGCCGCGGTACACGACGGCTATCAGGTGTTCGCGGTGATCGAC
GCCTCCGGCACCTACTCCAAGATGGCCCAGGAAGTCACCCTGGCACGGGTGGTCCAGGCCGGCGTGGTGCCG
ATGGACACCGCCGCGGTCTGCTCGGAAATCCAGCGCACCTGGAACCGCGACGACGCTGTGCAGTTCGCCGAA
GCCTACAGCGCGGTATTCCCGCACTACCAACTGCTGATCGAGAGCTACGCCAAGGCCCAGGCCGTGGTCAAC
AACCACGAGCAACTGGATTCGCAGCGCAAGTGA
Translation:
MSAPANFNGQTPKIDPANAAMLLIDHQSGLFQTVKDMPMTELRANATTLAKVATLAKIPVITTASVPQGPNG
PLIPEIHEAAPHAQYVARKGEINAWDNPEFVAAVKATGKKQLIIAGTITSVCMAFPSIAAVHDGYQVFAVID
ASGTYSKMAQEVTLARVVQAGVVPMDTAAVCSEIQRTWNRDDAVQFAEAYSAVFPHYQLLIESYAKAQAVVN
NHEQLDSQRK*
AnnotationID:3523GeneID:3515
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 15:03:27
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2419
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:7033
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24175
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3515

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5602 PA2419_tr translation of PA2419 226 99.55 99.99 0 1149.0
156189 gb|AAG05807.1|AE004669_4 (AE004669) probable hydrolase [Pseudomonas aeruginosa PAO1] 226 99.55 99.99 0 1149.0
156190 emb|CAE31474.1| (BX640440) probable hydrolase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 229 85.15 90.82 4 997.0
156191 emb|CAE40290.1| (BX640425) probable hydrolase [Bordetella parapertussis] 229 85.15 90.82 4 997.0
156192 emb|CAE31578.1| (BX640440) putative isochorismatase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 226 82.30 89.38 1 946.0
GC ORFID: 46517How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2419Glimmer Score:
Start: 2012287Stop: 2012967
Length: 681
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2419 translation of PA2419Homolog Bit Score 447.0
Other Homologs: t_PA1202 (ORF: BLASTX 182.0), t_PA2419 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCTCCCGCCAACTTCAACGGCCAGACCCCGAAGATCGATCCGGCCAACGCCGCCATGTTGCTGATC
GACCACCAGAGCGGCCTGTTCCAGACGGTCAAGGACATGCCGATGACCGAACTGCGCGCCAACGCCACCACC
CTGGCCAAGGTCGCCACCCTGGCGAAGATCCCGGTGATCACCACCGCCTCGGTACCGCAGGGCCCCAACGGC
CCGCTGATCCCGGAGATCCACGAGGCCGCGCCGCACGCCCAGTACGTCGCGCGCAAGGGTGAGATCAATGCC
TGGGACAACCCGGAATTCGTCGCCGCGGTGAAGGCCACCGGCAAGAAGCAACTGATCATCGCCGGCACCATC
ACCAGCGTGTGCATGGCCTTCCCCAGCATCGCCGCGGTACACGACGGCTATCAGGTGTTCGCGGTGATCGAC
GCCTCCGGCACCTACTCCAAGATGGCCCAGGAAGTCACCCTGGCACGGGTGGTCCAGGCCGGCGTGGTGCCG
ATGGACACCGCCGCGGTCTGCTCGGAAATCCAGCGCACCTGGAACCGCGACGACGCTGTGCAGTTCGCCGAA
GCCTACAGCGCGGTATTCCCGCACTACCAACTGCTGATCGAGAGCTACGCCAAGGCCCAGGCCGTGGTCAAC
AACCACGAGCAACTGGATTCGCAGCGCAAGTGA