ViewGene
Locus Name:
GeneID:
Location:

GeneID:3513
TrivialName: PA14_47910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47910
PAO1 Ortholog Locus:PA1261
Sequence Length:675
Protein Length:224
Start: 4264504
Stop: 4265178
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04650.1|AE004555_10 (AE004555) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 222/224 (99%), Positives = 223/224 (99%)
Sequence:
ATGCCCGGCGTGGTGTTCTTCGTCAAGGACGAGCGCGCCCGCTACGTCCTGGTCAACCGCACCCTGGCACGC
CGCTGCGGCGTGAAGGAGAAGACCGAACTGCTCGGCCGCAGCGCCGACGAGGTCTTCCCTTCCAGCCTCGGT
CCGCTCTATGCCGAGCAGGATCGGCGCGTGCTGCGCGGCGGCGCGACGCTGGAGAACCAGTTGGAGCTGCAC
CTCTATCCCGGTCGCCAGCCGGGCTGGTGCCTGACCCACAAGCAGGCGCTGCGCGATGCCGACGGGGCGATC
ATCGGCATGGCCGGCATCTCCCACGACCTGCCGGCGGCGCAGTCGGCGCACCCGGCCTACGGGCGGCTGGCG
GCGGTGGATGCGCATATCCGCGAGCACTACGACCAGCCGCTCAGCCTCGCCGATCTCACTGCCATCGCCGGG
CTCTCGGTGGCGCAACTGGAACGTCACTGCAAGCGCATCTTCCAGCTCACCCCACGGCAGATGATCCACAAG
GCGCGGCTCGGCGCCGCCTCGCAACTGCTCGCCGGCGACGCGCCGATCACCGAGATCGCCCTGCGCTGCGGC
TACACCGACCACAGCGCCTTCAGCCGCCAGTTCAAGGCGCTCACCGGACTCTCGCCGAGCCAGTACCGCGAG
ACCCATCGCCAGCCCCGAAAAGCGTAA
Translation:
MPGVVFFVKDERARYVLVNRTLARRCGVKEKTELLGRSADEVFPSSLGPLYAEQDRRVLRGGATLENQLELH
LYPGRQPGWCLTHKQALRDADGAIIGMAGISHDLPAAQSAHPAYGRLAAVDAHIREHYDQPLSLADLTAIAG
LSVAQLERHCKRIFQLTPRQMIHKARLGAASQLLAGDAPITEIALRCGYTDHSAFSRQFKALTGLSPSQYRE
THRQPRKA*
AnnotationID:3521GeneID:3513
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 13:01:15
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1261
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70175.1|AE016656_10 (AE016791) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 279

 Score =  290 bits (742), Expect = 4e-78
 Identities = 137/216 (63%), Positives = 168/216 (77%)

>gb|AAM37402.1| (AE011895) transcriptional regulator [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 226

 Score =  213 bits (543), Expect = 5e-55
 Identities = 111/215 (51%), Positives = 145/215 (67%), Gaps = 2/215 (0%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 83.3 bits (206), Expect = 2e-17
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 1/84 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7029




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24171




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37482




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3513_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3513
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5600
                           PA1261_tr
                           translation of PA1261
                           224
                           99.10
                           99.55
                           0
                           1151.0
     

     
     
156106
                           gb|AAG04650.1|AE004555_10
                           (AE004555) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           224
                           99.10
                           99.55
                           0
                           1151.0
     

     
     
156108
                           gb|AAQ60495.1|
                           (AE016920) probable transcriptional regulator [Chromobacterium violaceum ATCC 12472]
                           267
                           49.43
                           61.79
                           43
                           699.0
     

     
     
156107
                           gb|AAN70175.1|AE016656_10
                           (AE016791) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           280
                           48.92
                           60.00
                           57
                           735.0
     

     
     
156110
                           gb|AAM37402.1|
                           (AE011895) transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306]
                           231
                           48.48
                           63.20
                           12
                           544.0
     

     






      

          
GC ORFID: 46515How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1261Glimmer Score: 

          
Start: 689405Stop: 688731

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1261 translation of PA1261Homolog Bit Score 447.0

          
Other Homologs:  t_PA1261 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGGCGTGGTGTTCTTCGTCAAGGACGAGCGCGCCCGCTACGTCCTGGTCAACCGCACCCTGGCACGC 
CGCTGCGGCGTGAAGGAGAAGACCGAACTGCTCGGCCGCAGCGCCGACGAGGTCTTCCCTTCCAGCCTCGGT 
CCGCTCTATGCCGAGCAGGATCGGCGCGTGCTGCGCGGCGGCGCGACGCTGGAGAACCAGTTGGAGCTGCAC 
CTCTATCCCGGTCGCCAGCCGGGCTGGTGCCTGACCCACAAGCAGGCGCTGCGCGATGCCGACGGGGCGATC 
ATCGGCATGGCCGGCATCTCCCACGACCTGCCGGCGGCGCAGTCGGCGCACCCGGCCTACGGGCGGCTGGCG 
GCGGTGGATGCGCATATCCGCGAGCACTACGACCAGCCGCTCAGCCTCGCCGATCTCACTGCCATCGCCGGG 
CTCTCGGTGGCGCAACTGGAACGTCACTGCAAGCGCATCTTCCAGCTCACCCCACGGCAGATGATCCACAAG 
GCGCGGCTCGGCGCCGCCTCGCAACTGCTCGCCGGCGACGCGCCGATCACCGAGATCGCCCTGCGCTGCGGC 
TACACCGACCACAGCGCCTTCAGCCGCCAGTTCAAGGCGCTCACCGGACTCTCGCCGAGCCAGTACCGCGAG 
ACCCATCGCCAGCCCCGAAAAGCGTAA