ViewGene
Locus Name:
GeneID:
Location:

GeneID:3512
TrivialName: PA14_49320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49320
PAO1 Ortholog Locus:PA1167
Sequence Length:672
Protein Length:223
Start: 4382901
Stop: 4382230
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04556.1|AE004547_2 (AE004547) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 221/223 (99%), Positives = 221/223 (99%)
Sequence:
ATGCCTGACCTGAGTACCTGGAACCTGACCATTCCCCAGGGCCGCCCGGCCATCACCATCTCCACCAGCCAA
TTGCAGCGCGACTACCGCAGCGACTATTTCCAGCGCACCGCCGACGGCATTCGCTTCTGGGTGCCGGTCAAC
GGCAGCCACACGCGCAACAGCGAGTTCCCGCGCAGCGAGTTGCGCGAGACCCTGTCCAGCGGCAGGCCCTAC
AACTGGCGTTACGCCAGGGCCGACAACTGGCTGGAGGCGACCCTGCGCATCGAGGCGGTGCCCTCGACCCGG
CGCATGATCATCGGCCAGATCCACAGCGATGGCAGCAATAGCGGCCAGGCCGCGCCGCTGGTGAAGCTGCTC
TACCAGTTGCGGCTCGACCAGGGGCGGGTCCAGGCGCTGGTCCGCGAGCGACCGGACGATGGCGGGACCAGG
GCCTACACGCTGATGGACGGGATTCCTCTCGGCCAGTCGTTCAGCTACCGCATCGGCGTGTCTCGCAGCGGA
TTGCTCAGCGTGTCGGTGAATGGCAGCGCCCTGGGGCAGCAACTGGACCCGCAGTGGGCCTACCAGGGCCTC
TATTTCAAGGCCGGACTCTATCTACAGGACAACCGCGGGCCGTCCAGCGAGGGCGGGCGGGCGACGTTCAGC
GAGCTGCGCGTTAGCCATCAATGA
Translation:
MPDLSTWNLTIPQGRPAITISTSQLQRDYRSDYFQRTADGIRFWVPVNGSHTRNSEFPRSELRETLSSGRPY
NWRYARADNWLEATLRIEAVPSTRRMIIGQIHSDGSNSGQAAPLVKLLYQLRLDQGRVQALVRERPDDGGTR
AYTLMDGIPLGQSFSYRIGVSRSGLLSVSVNGSALGQQLDPQWAYQGLYFKAGLYLQDNRGPSSEGGRATFS
ELRVSHQ*
AnnotationID:3520GeneID:3512
AnnotatorUID: danlee
Modification Date/Time: 2004-02-03 16:04:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7027




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24169




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3512
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5598
                           PA1167_tr
                           translation of PA1167
                           223
                           99.10
                           99.10
                           0
                           1151.0
     

     
     
156102
                           gb|AAG04556.1|AE004547_2
                           (AE004547) hypothetical protein PA1167 [Pseudomonas aeruginosa PAO1]
                           223
                           99.10
                           99.10
                           0
                           1151.0
     

     
     
5599
                           PA1784_tr
                           translation of PA1784
                           231
                           46.75
                           61.90
                           8
                           502.0
     

     
     
156104
                           gb|AAG05173.1|AE004604_3
                           (AE004604) hypothetical protein PA1784 [Pseudomonas aeruginosa PAO1]
                           231
                           46.75
                           61.90
                           8
                           502.0
     

     
     
156103
                           gb|AAO57079.1|
                           (AE016868) lyase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           228
                           46.49
                           62.28
                           11
                           512.0
     

     






      

          
GC ORFID: 46514How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1167Glimmer Score: 

          
Start: 571007Stop: 571678

          
Length: 672


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1167 translation of PA1167Homolog Bit Score 447.0

          
Other Homologs:  t_PA1784 (ORF: BLASTX 194.0), psyr_15may02_Scaffold9_revised_gene7978 (ORF: BLASTX 193.0), t_PA1167 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGACCTGAGTACCTGGAACCTGACCATTCCCCAGGGCCGCCCGGCCATCACCATCTCCACCAGCCAA 
TTGCAGCGCGACTACCGCAGCGACTATTTCCAGCGCACCGCCGACGGCATTCGCTTCTGGGTGCCGGTCAAC 
GGCAGCCACACGCGCAACAGCGAGTTCCCGCGCAGCGAGTTGCGCGAGACCCTGTCCAGCGGCAGGCCCTAC 
AACTGGCGTTACGCCAGGGCCGACAACTGGCTGGAGGCGACCCTGCGCATCGAGGCGGTGCCCTCGACCCGG 
CGCATGATCATCGGCCAGATCCACAGCGATGGCAGCAATAGCGGCCAGGCCGCGCCGCTGGTGAAGCTGCTC 
TACCAGTTGCGGCTCGACCAGGGGCGGGTCCAGGCGCTGGTCCGCGAGCGACCGGACGATGGCGGGACCAGG 
GCCTACACGCTGATGGACGGGATTCCTCTCGGCCAGTCGTTCAGCTACCGCATCGGCGTGTCTCGCAGCGGA 
TTGCTCAGCGTGTCGGTGAATGGCAGCGCCCTGGGGCAGCAACTGGACCCGCAGTGGGCCTACCAGGGCCTC 
TATTTCAAGGCCGGACTCTATCTACAGGACAACCGCGGGCCGTCCAGCGAGGGCGGGCGGGCGACGTTCAGC 
GAGCTGCGCGTTAGCCATCAATGA