ViewGene
Locus Name:
GeneID:
Location:

GeneID:3511
TrivialName: PA14_61860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61860
PAO1 Ortholog Locus:PA4676
Sequence Length:648
Protein Length:215
Start: 5518065
Stop: 5517418
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08063.1|AE004881_6 (AE004881) probable carbonic anhydrase [Pseudomonas aeruginosa PAO1]
Identities = 215/215 (100%), Positives = 215/215 (100%)
Sequence:
ATGAGCGACTTGCAGCAACTGTTCGAGAACAACGTCCGCTGGGCCGAAGCGATCAAGCAGGAAGACCCGGAC
TTCTTCGCCAAGCTGGCCCGCCAGCAGACCCCCGAGTACCTCTGGATCGGCTGCTCCGACGCGCGGGTGCCG
GCCAACGAAATCGTCGGCATGCTGCCCGGCGACCTGTTCGTCCATCGCAACGTCGCCAACGTCGTGCTGCAC
ACCGACCTCAACTGCCTGTCGGTGATCCAGTTCGCCGTCGACGTGCTCAAGGTCAAGCACATCCTGGTCACC
GGCCACTACGGCTGCGGCGGCGTGCGCGCCTCCCTGCACAACGACCAGCTCGGCCTGATCGACGGCTGGCTG
CGCAGCATTCGCGACCTCGCCTATGAATACCGCGAGCACCTGGAGCAGTTGCCGACCGAGGAGGAGCGCGTC
GATCGCCTCTGCGAGCTCAACGTGATCCAGCAGGTGGCCAACGTCAGCCACACCAGCATCGTCCAGAACGCC
TGGCACCGCGGCCAGTCGCTGTCCGTGCATGGCTGCATCTACGGGATCAAGGATGGCCTGTGGAAGAACCTC
AACGTCACCGTCAGCGGCCTCGACCAGTTGCCGCCGCAGTATCGCTTGAGTCCGCTGGGCGGTTGCTGCTGA
Translation:
MSDLQQLFENNVRWAEAIKQEDPDFFAKLARQQTPEYLWIGCSDARVPANEIVGMLPGDLFVHRNVANVVLH
TDLNCLSVIQFAVDVLKVKHILVTGHYGCGGVRASLHNDQLGLIDGWLRSIRDLAYEYREHLEQLPTEEERV
DRLCELNVIQQVANVSHTSIVQNAWHRGQSLSVHGCIYGIKDGLWKNLNVTVSGLDQLPPQYRLSPLGGCC*
AnnotationID:3519GeneID:3511
AnnotatorUID: diggins
Modification Date/Time: 2005-05-08 17:05:26
Gene Name:
Confidence Code:3
GeneProduct:putative carbonic anhydrase
Cell Localization:()
Synonyms:yadF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00484
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54528.1| (AE016859) carbonic anhydrase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 212

 Score =  378 bits (971), Expect = e-104
 Identities = 179/210 (85%), Positives = 195/210 (92%)

>gb|AAN55505.1|AE015689_5 (AE015689) carbonic anhydrase family protein [Shewanella oneidensis
           MR-1]
          Length = 201

 Score =  268 bits (684), Expect = 2e-71
 Identities = 124/196 (63%), Positives = 162/196 (82%), Gaps = 1/196 (0%)

>dbj|BAB33553.1| (AP002550) putative carbonic anhdrase [Escherichia coli O157:H7]
          Length = 220

 Score =  256 bits (655), Expect = 5e-68
 Identities = 113/207 (54%), Positives = 162/207 (78%), Gaps = 1/207 (0%)








 
Structural Features:
pfam00484, Pro_CA, Carbonic anhydrase.
CD-Length = 164 residues,  96.3% aligned
Score =  117 bits (294), Expect = 1e-27
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
 






   
Genomic Context:






   
Comment:


















    ReferenceID:7025




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24167




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37620




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3511_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3511
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5597
                           PA4676_tr
                           translation of PA4676
                           215
                           99.99
                           99.99
                           0
                           1152.0
     

     
     
156067
                           gb|AAG08063.1|AE004881_6
                           (AE004881) probable carbonic anhydrase [Pseudomonas aeruginosa PAO1]
                           215
                           99.99
                           99.99
                           0
                           1152.0
     

     
     
156068
                           gb|AAO54528.1|
                           (AE016859) carbonic anhydrase [Pseudomonas syringae pv. tomato str. DC3000]
                           215
                           83.25
                           90.69
                           3
                           968.0
     

     
     
156069
                           gb|AAN55505.1|AE015689_5
                           (AE015689) carbonic anhydrase family protein [Shewanella oneidensis MR-1]
                           217
                           58.06
                           75.57
                           18
                           684.0
     

     
     
156073
                           gb|AAM40851.1|
                           (AE012256) carbonic anhydrase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           228
                           53.94
                           69.29
                           21
                           652.0
     

     






      

          
GC ORFID: 46513How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4676Glimmer Score: 

          
Start: 4781745Stop: 4781098

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4676 translation of PA4676Homolog Bit Score 448.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4238 (ORF: BLASTX 381.0), t_PA4676 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGACTTGCAGCAACTGTTCGAGAACAACGTCCGCTGGGCCGAAGCGATCAAGCAGGAAGACCCGGAC 
TTCTTCGCCAAGCTGGCCCGCCAGCAGACCCCCGAGTACCTCTGGATCGGCTGCTCCGACGCGCGGGTGCCG 
GCCAACGAAATCGTCGGCATGCTGCCCGGCGACCTGTTCGTCCATCGCAACGTCGCCAACGTCGTGCTGCAC 
ACCGACCTCAACTGCCTGTCGGTGATCCAGTTCGCCGTCGACGTGCTCAAGGTCAAGCACATCCTGGTCACC 
GGCCACTACGGCTGCGGCGGCGTGCGCGCCTCCCTGCACAACGACCAGCTCGGCCTGATCGACGGCTGGCTG 
CGCAGCATTCGCGACCTCGCCTATGAATACCGCGAGCACCTGGAGCAGTTGCCGACCGAGGAGGAGCGCGTC 
GATCGCCTCTGCGAGCTCAACGTGATCCAGCAGGTGGCCAACGTCAGCCACACCAGCATCGTCCAGAACGCC 
TGGCACCGCGGCCAGTCGCTGTCCGTGCATGGCTGCATCTACGGGATCAAGGATGGCCTGTGGAAGAACCTC 
AACGTCACCGTCAGCGGCCTCGACCAGTTGCCGCCGCAGTATCGCTTGAGTCCGCTGGGCGGTTGCTGCTGA