ViewGene
Locus Name:
GeneID:
Location:

GeneID:3510
TrivialName: PA14_61330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61330
PAO1 Ortholog Locus:PA4635
Sequence Length:705
Protein Length:234
Start: 5475647
Stop: 5476351
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08023.1|AE004878_1 (AE004878) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 234/234 (100%), Positives = 234/234 (100%)
Sequence:
ATGGATTGGAAAGTATTTCTCCTGCGCGTCGCGGTCGCGCTGGTCCTGGGCGCCCTGATCGGCGCCGAACGC
CAACTGCGCCAACGCCTCACCGGCCTGCGCACCAACGCGCTGGTCAGCACTGGCGCCTGCCTGTTCGTGCTG
ATGACCCAGGGCGTGCCCGGCCTGGCCGGCGACGCTTCACGGATCGCCGCCTATGTGGTCTCCGGGATCGGC
TTCCTCGGCGGCGGCGTGATCATGCGCGACGGCCTCAACGTGCGCGGCCTGAACACCGCAGCCACCCTCTGG
TGCACCGCCGCCATCGGCGTCCTGTGCAGCATGGGCCTGCTGCTGGAGGCCACGCTCGGCAGCCTGGTGGTG
CTCTGCGCCAACATCCTGCTGCGCGACATCGCCCAACGCCTGAACCGCCAGGACGTGTTGCCGGCCAGCGAG
GCCGAGCAACGCTACGAAGTGCAGATCGTCTGCCGCGCCGAGGACGAGATCCAGGTTCGCAGCCTGATGCTG
CACAGCCTCGGCAGCAGCGACCTGCGCCTGCAATCGCTGCACAGCGAGGATCTGGACAACCCGGCCAAGCTG
GAAGTCCGCGCCGAACTGCTCGGCACTCCCGAGGCTCCGGCGCAGCTGGAACGCCTGGTCAGCCGGGTCAGC
CTGGAGAAGGGCGTCAGCTCGGTGCGCTGGCAGGTCTTCGAACTGGCGGCCGACTGA
Translation:
MDWKVFLLRVAVALVLGALIGAERQLRQRLTGLRTNALVSTGACLFVLMTQGVPGLAGDASRIAAYVVSGIG
FLGGGVIMRDGLNVRGLNTAATLWCTAAIGVLCSMGLLLEATLGSLVVLCANILLRDIAQRLNRQDVLPASE
AEQRYEVQIVCRAEDEIQVRSLMLHSLGSSDLRLQSLHSEDLDNPAKLEVRAELLGTPEAPAQLERLVSRVS
LEKGVSSVRWQVFELAAD*
AnnotationID:3518GeneID:3510
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 14:02:00
Gene Name:
Confidence Code:3
GeneProduct:putative magnesium transporter, MgtC family
Cell Localization:()
Synonyms:mgtC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1285,pfam02308
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68851.1|AE016517_11 (AE016786) magnesium transporter, MgtC family [Pseudomonas putida
           KT2440]
          Length = 237

 Score =  390 bits (1003), Expect = e-108
 Identities = 200/229 (87%), Positives = 216/229 (94%), Gaps = 1/229 (0%)

>emb|CAC90482.1| (AJ414149) Mg(2+) transport ATPase protein C [Yersinia pestis CO92]
          Length = 236

 Score =  236 bits (602), Expect = 8e-62
 Identities = 121/223 (54%), Positives = 160/223 (71%), Gaps = 2/223 (0%)






 
Structural Features:
COG1285, SapB, Uncharacterized membrane protein

pfam02308, MgtC, MgtC family. The MgtC protein is found in an operon with 
the Mg2+ transporter protein MgtB.
CD-Length = 130 residues,  98.5% aligned
Score =  128 bits (323), Expect = 1e-30
Identities = 67/129 (51%), Positives = 90/129 (69%), Gaps = 1/129 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7023




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24165




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31587




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3510_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3510
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5595
                           PA4635_tr
                           translation of PA4635
                           234
                           99.99
                           99.99
                           0
                           1152.0
     

     
     
156042
                           gb|AAG08023.1|AE004878_1
                           (AE004878) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           234
                           99.99
                           99.99
                           0
                           1152.0
     

     
     
156043
                           gb|AAN68851.1|AE016517_11
                           (AE016786) magnesium transporter, MgtC family [Pseudomonas putida KT2440]
                           237
                           85.65
                           92.40
                           3
                           1004.0
     

     
     
156044
                           gb|AAM85387.1|AE013784_6
                           (AE013784) putative transport ATPase [Yersinia pestis KIM]
                           243
                           52.26
                           68.31
                           16
                           608.0
     

     
     
156045
                           emb|CAC90482.1|
                           (AJ414149) Mg(2+) transport ATPase protein C [Yersinia pestis CO92]
                           243
                           52.26
                           68.31
                           16
                           608.0
     

     






      

          
GC ORFID: 46512How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4635Glimmer Score: 

          
Start: 4739327Stop: 4740031

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4635 translation of PA4635Homolog Bit Score 448.0

          
Other Homologs:  t_PA2558 (ORF: BLASTX 152.0), t_PA4635 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTGGAAAGTATTTCTCCTGCGCGTCGCGGTCGCGCTGGTCCTGGGCGCCCTGATCGGCGCCGAACGC 
CAACTGCGCCAACGCCTCACCGGCCTGCGCACCAACGCGCTGGTCAGCACTGGCGCCTGCCTGTTCGTGCTG 
ATGACCCAGGGCGTGCCCGGCCTGGCCGGCGACGCTTCACGGATCGCCGCCTATGTGGTCTCCGGGATCGGC 
TTCCTCGGCGGCGGCGTGATCATGCGCGACGGCCTCAACGTGCGCGGCCTGAACACCGCAGCCACCCTCTGG 
TGCACCGCCGCCATCGGCGTCCTGTGCAGCATGGGCCTGCTGCTGGAGGCCACGCTCGGCAGCCTGGTGGTG 
CTCTGCGCCAACATCCTGCTGCGCGACATCGCCCAACGCCTGAACCGCCAGGACGTGTTGCCGGCCAGCGAG 
GCCGAGCAACGCTACGAAGTGCAGATCGTCTGCCGCGCCGAGGACGAGATCCAGGTTCGCAGCCTGATGCTG 
CACAGCCTCGGCAGCAGCGACCTGCGCCTGCAATCGCTGCACAGCGAGGATCTGGACAACCCGGCCAAGCTG 
GAAGTCCGCGCCGAACTGCTCGGCACTCCCGAGGCTCCGGCGCAGCTGGAACGCCTGGTCAGCCGGGTCAGC 
CTGGAGAAGGGCGTCAGCTCGGTGCGCTGGCAGGTCTTCGAACTGGCGGCCGACTGA