ViewGene

Locus Name:
GeneID:
Location:

GeneID:3509
TrivialName: PA14_11180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11180
PAO1 Ortholog Locus:PA4074
Sequence Length:669
Protein Length:222
Start: 973594
Stop: 972926
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07461.1|AE004823_7 (AE004823) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 222/222 (100%), Positives = 222/222 (100%)
Sequence:
ATGCCTTCGACCCTGTCGCCCGACCTCGGCCCGCGCTGCATGCAGGCCTTCACCCAGGTGGTACCGGCCAGC
CTGTGCGTGTTCTATCGCATCGACGAGGACTGCCGCGCACACGATTTCCAGCTCCTGCGGATGCCGGCCGGC
ATGCACCGCGACTACCTGCGCCACTACCGCGACTACGATCCGCTGCAGCCGCGCCACTGCCTGGCCAGCGCT
TCGCCGGTGGTGCCGCTGCGCCAGGGCATCGCCCGCCAGCCCGCGGAGGACAGCGCGCTGTACCAGGGCTTC
CTGCGACGCCACGGGATCTGCGACGTGGTCGAGGTGCTGGCGCATGCGCATCAGCGTCCGGTCGCGGCCCTG
TCGTTGCTGCGCGACGCCCGCCTAGGGGCCTTCTCCGACCAGGAGCTGCGACAGTTGCGCGCCCTGCATGGC
CTGATGGAGCTGGCGGCGCAGGCATGCGCCACGCCAACGGCCAGCGCCGAGCGCCTGCAAGGCCTGACACCG
AGGGAACGGGAGATCGCCCTGCTGCTGCGCGACGGCGTCAGCAACAAATGCCTGGCTCAGTGCCTCGGACTC
GGCCTGCCGACGGTGAAGACCCACCTGCTCAACCTGTTCCGCAAGACCGGCGCGCGCAGCCGCACCGAGCTG
GTGAAGCGACTCTTCCTCTAG
Translation:
MPSTLSPDLGPRCMQAFTQVVPASLCVFYRIDEDCRAHDFQLLRMPAGMHRDYLRHYRDYDPLQPRHCLASA
SPVVPLRQGIARQPAEDSALYQGFLRRHGICDVVEVLAHAHQRPVAALSLLRDARLGAFSDQELRQLRALHG
LMELAAQACATPTASAERLQGLTPREREIALLLRDGVSNKCLAQCLGLGLPTVKTHLLNLFRKTGARSRTEL
VKRLFL*
AnnotationID:3517GeneID:3509
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 06:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4074
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00421
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon; lux regulon 
CD-Length = 58 residues, 100.0% aligned
Score = 64.8 bits (158), Expect = 8e-12
Identities = 32/58 (55%), Positives = 42/58 (72%)
Genomic Context:
Comment:
ReferenceID:7021
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24163
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36823
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3509_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3509

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5594 PA4074_tr translation of PA4074 222 99.99 99.99 0 1152.0
156041 gb|AAG07461.1|AE004823_7 (AE004823) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 222 99.99 99.99 0 1152.0
GC ORFID: 46511How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4074Glimmer Score:
Start: 3980343Stop: 3981011
Length: 669
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4074 translation of PA4074Homolog Bit Score 448.0
Other Homologs: t_PA4074 (ORF: GLIMMER)
GC ORF Sequence
ATGCCTTCGACCCTGTCGCCCGACCTCGGCCCGCGCTGCATGCAGGCCTTCACCCAGGTGGTACCGGCCAGC
CTGTGCGTGTTCTATCGCATCGACGAGGACTGCCGCGCACACGATTTCCAGCTCCTGCGGATGCCGGCCGGC
ATGCACCGCGACTACCTGCGCCACTACCGCGACTACGATCCGCTGCAGCCGCGCCACTGCCTGGCCAGCGCT
TCGCCGGTGGTGCCGCTGCGCCAGGGCATCGCCCGCCAGCCCGCGGAGGACAGCGCGCTGTACCAGGGCTTC
CTGCGACGCCACGGGATCTGCGACGTGGTCGAGGTGCTGGCGCATGCGCATCAGCGTCCGGTCGCGGCCCTG
TCGTTGCTGCGCGACGCCCGCCTAGGGGCCTTCTCCGACCAGGAGCTGCGACAGTTGCGCGCCCTGCATGGC
CTGATGGAGCTGGCGGCGCAGGCATGCGCCACGCCAACGGCCAGCGCCGAGCGCCTGCAAGGCCTGACACCG
AGGGAACGGGAGATCGCCCTGCTGCTGCGCGACGGCGTCAGCAACAAATGCCTGGCTCAGTGCCTCGGACTC
GGCCTGCCGACGGTGAAGACCCACCTGCTCAACCTGTTCCGCAAGACCGGCGCGCGCAGCCGCACCGAGCTG
GTGAAGCGACTCTTCCTCTAG