ViewGene
Locus Name:
GeneID:
Location:

GeneID:3508
TrivialName: PA14_37770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37770
PAO1 Ortholog Locus:PA2067
Sequence Length:669
Protein Length:222
Start: 3367771
Stop: 3368439
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05455.1|AE004633_6 (AE004633) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 221/222 (99%), Positives = 221/222 (99%)
Sequence:
ATGGACGGCGTCCTGATCAGCTCCCGCGAAGCCATCGCCGCGGCCTGGAGCCGGGTTGCCGGCGAACAGGGC
GTGGCGCTCGGCCCGGACTGCCTGCGCGACCACGTGCACGGTCGCCCGGGCGGCTACACCCTGGACTATCTG
TTCGGCCACCTGCCGATGGAGCGCCGGCGGATCCTCAAGCAACGGGTCGATGCGCTGGAGGAAGGCGCCGAC
TGTCCCCTGCTGCCCGGCGTCGCCGCGGTGATCCGCCAGTTGCGTTGGCTGGACGTGCCCTTGGCGCTGGTC
ACCAGCAGTTGGCCGGCACGCATCGACCACGTGCTGCGCCAGCACGACCTGCAGGCGGCGTTCCGCACCCTG
GTCAGCCGCGACGACGTGGTCCACGGCAAGCCGGCTCCGGATGGCTATCGCCTGGCCGCGGCCAGGCTCGGC
GTGGCACCGTCGCGCTGCCTGGTGTTCGAAGACTCCCTCAGCGGCGTGCAGGCAGCCTGTGCCGCCGGCGCG
ACCTGCGTGGCGATCGGCGAGGAGAGCGGCCTGCTCGCCGCCGGCGCGCGCTGGTCGGTCCGGGATTTCCGC
GAGCTGCGGATCGTCCGCGAAGACGACCGGCTGTACTGCCAGCATCGGCACCCCGCCACGACCGACAGCGAG
AGGAGCGTTGGCGTCCCATGA
Translation:
MDGVLISSREAIAAAWSRVAGEQGVALGPDCLRDHVHGRPGGYTLDYLFGHLPMERRRILKQRVDALEEGAD
CPLLPGVAAVIRQLRWLDVPLALVTSSWPARIDHVLRQHDLQAAFRTLVSRDDVVHGKPAPDGYRLAAARLG
VAPSRCLVFEDSLSGVQAACAAGATCVAIGEESGLLAAGARWSVRDFRELRIVREDDRLYCQHRHPATTDSE
RSVGVP*
AnnotationID:3516GeneID:3508
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:50
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2067
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative phosphatase
Functional Category Confidence Code:5
COGs:COG0637
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0637, COG0637, Predicted phosphatase/phosphohexomutase
CD-Length = 221 residues,  95.9% aligned
Score =  139 bits (350), Expect = 4e-34
Identities = 68/213 (31%), Positives = 93/213 (43%), Gaps = 7/213 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7019




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24161




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32632




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3508_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3508
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5593
                           PA2067_tr
                           translation of PA2067
                           222
                           99.54
                           99.54
                           0
                           1152.0
     

     
     
156040
                           gb|AAG05455.1|AE004633_6
                           (AE004633) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           222
                           99.54
                           99.54
                           0
                           1152.0
     

     






      

          
GC ORFID: 46510How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2067Glimmer Score: 

          
Start: 1586142Stop: 1585474

          
Length: 669


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2067 translation of PA2067Homolog Bit Score 448.0

          
Other Homologs:  t_PA2067 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGGCGTCCTGATCAGCTCCCGCGAAGCCATCGCCGCGGCCTGGAGCCGGGTTGCCGGCGAACAGGGC 
GTGGCGCTCGGCCCGGACTGCCTGCGCGACCACGTGCACGGTCGCCCGGGCGGCTACACCCTGGACTATCTG 
TTCGGCCACCTGCCGATGGAGCGCCGGCGGATCCTCAAGCAACGGGTCGATGCGCTGGAGGAAGGCGCCGAC 
TGTCCCCTGCTGCCCGGCGTCGCCGCGGTGATCCGCCAGTTGCGTTGGCTGGACGTGCCCTTGGCGCTGGTC 
ACCAGCAGTTGGCCGGCACGCATCGACCACGTGCTGCGCCAGCACGACCTGCAGGCGGCGTTCCGCACCCTG 
GTCAGCCGCGACGACGTGGTCCACGGCAAGCCGGCTCCGGATGGCTATCGCCTGGCCGCGGCCAGGCTCGGC 
GTGGCACCGTCGCGCTGCCTGGTGTTCGAAGACTCCCTCAGCGGCGTGCAGGCAGCCTGTGCCGCCGGCGCG 
ACCTGCGTGGCGATCGGCGAGGAGAGCGGCCTGCTCGCCGCCGGCGCGCGCTGGTCGGTCCGGGATTTCCGC 
GAGCTGCGGATCGTCCGCGAAGACGACCGGCTGTACTGCCAGCATCGGCACCCCGCCACGACCGACAGCGAG 
AGGAGCGTTGGCGTCCCATGA