ViewGene
Locus Name:
GeneID:
Location:

GeneID:3507
TrivialName: PA14_69700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69700
PAO1 Ortholog Locus:PA5279
Sequence Length:702
Protein Length:233
Start: 6216806
Stop: 6217507
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08664.1|AE004940_8 (AE004940) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 232/233 (99%), Positives = 232/233 (99%)
Sequence:
ATGACCGAGAAAAGCCAGGAACCGACAGCAGCGCTGGACGCCGAGCAGGTGGCCGCCTATCTGAGCCAGCAC
CCGGAGTTCTTCGTCGAGCATGACGAGCTGATCCCCGAGCTGCGCATCCCGCACCAGCCCGGCGACGCCGTG
TCGCTGGTGGAGCGCCAGGTACGCCTGCTGCGCGAGCGCAACATCGAGATGCGCCACCGGCTCTCGCAACTG
ATGGACGTGGCCCGCGAGAACGACCGCCTGTTCGACAAGACCCGCCGCCTGGTCCTCGACCTGCTCGACGCC
ACCAGCCTGGAAGACGTGGTCAGTACCGTCGAGGACAGCCTGCGCCACGAGTTCCATGTGCCCTACGTGAGC
CTGATCCTGTTCAGCGACAGTAGCGTCTCGGTGGGCCGCTCGGTGAGCAGCGCGGAGGCGCACCAGGCCATC
GGCGGCCTGCTCTCCGGCGGCAAGACCGTCTGCGGCGTGCTGCGTCCGCACGAACTAGCGTTCCTCTTCGGC
GAGAGCGACCGCGACGAGATCGGCTCCGCAGCGGTGGTCTCCCTGAGTTTCCAGGGCCTGCACGGCGTGCTC
GCCATCGGCAGTCCCGATCCGCAGCATTACAAGAGTTCCCTCGGCACCCTGTTCCTCGGCTATGTCGCCGAG
GTCCTGGCCCGCGTGCTGCCGCGCTTCTCCTCGCCGCTGCGCTCGGTCCGCTGA
Translation:
MTEKSQEPTAALDAEQVAAYLSQHPEFFVEHDELIPELRIPHQPGDAVSLVERQVRLLRERNIEMRHRLSQL
MDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFHVPYVSLILFSDSSVSVGRSVSSAEAHQAI
GGLLSGGKTVCGVLRPHELAFLFGESDRDEIGSAAVVSLSFQGLHGVLAIGSPDPQHYKSSLGTLFLGYVAE
VLARVLPRFSSPLRSVR*
AnnotationID:3515GeneID:3507
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:50
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5279
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24159




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34788




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3507_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3507
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5592
                           PA5279_tr
                           translation of PA5279
                           233
                           99.57
                           99.57
                           0
                           1155.0
     

     
     
156034
                           gb|AAG08664.1|AE004940_8
                           (AE004940) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           233
                           99.57
                           99.57
                           0
                           1155.0
     

     
     
156035
                           emb|CAA55225.1|
                           (X78478) orf2332 [Pseudomonas aeruginosa]
                           233
                           99.57
                           99.57
                           0
                           1155.0
     

     
     
156036
                           gb|AAN70794.1|AE016723_6
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           236
                           71.18
                           81.35
                           3
                           833.0
     

     
     
156037
                           gb|AAO53769.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           245
                           66.53
                           79.59
                           13
                           791.0
     

     






      

          
GC ORFID: 46509How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5279Glimmer Score: 

          
Start: 5480493Stop: 5481194

          
Length: 702


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5279 translation of PA5279Homolog Bit Score 449.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3116 (ORF: BLASTX 310.0), t_PA5279 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAGAAAAGCCAGGAACCGACAGCAGCGCTGGACGCCGAGCAGGTGGCCGCCTATCTGAGCCAGCAC 
CCGGAGTTCTTCGTCGAGCATGACGAGCTGATCCCCGAGCTGCGCATCCCGCACCAGCCCGGCGACGCCGTG 
TCGCTGGTGGAGCGCCAGGTACGCCTGCTGCGCGAGCGCAACATCGAGATGCGCCACCGGCTCTCGCAACTG 
ATGGACGTGGCCCGCGAGAACGACCGCCTGTTCGACAAGACCCGCCGCCTGGTCCTCGACCTGCTCGACGCC 
ACCAGCCTGGAAGACGTGGTCAGTACCGTCGAGGACAGCCTGCGCCACGAGTTCCATGTGCCCTACGTGAGC 
CTGATCCTGTTCAGCGACAGTAGCGTCTCGGTGGGCCGCTCGGTGAGCAGCGCGGAGGCGCACCAGGCCATC 
GGCGGCCTGCTCTCCGGCGGCAAGACCGTCTGCGGCGTGCTGCGTCCGCACGAACTAGCGTTCCTCTTCGGC 
GAGAGCGACCGCGACGAGATCGGCTCCGCAGCGGTGGTCTCCCTGAGTTTCCAGGGCCTGCACGGCGTGCTC 
GCCATCGGCAGTCCCGATCCGCAGCATTACAAGAGTTCCCTCGGCACCCTGTTCCTCGGCTATGTCGCCGAG 
GTCCTGGCCCGCGTGCTGCCGCGCTTCTCCTCGCCGCTGCGCTCGGTCCGCTGA