ViewGene
Locus Name:
GeneID:
Location:

GeneID:3506
TrivialName: PA14_68050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68050
PAO1 Ortholog Locus:PA5151
Sequence Length:690
Protein Length:229
Start: 6071759
Stop: 6072448
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08536.1|AE004928_2 (AE004928) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 227/229 (99%), Positives = 228/229 (99%)
Sequence:
ATGCTGAAGAAAAGCTTCAACTCCCTGCTCACCACCTGGCTCGCCGGCCTGCTGGTGATGCTGCCGCTGGTA
CTCACCGTAGCCTTGCTGGCCTGGGTGGTCAGCTTGCTGAACCGCTTCGTCGGTCCATCCAGCCTGATCGGT
CGCGGCTTCGCCGCCATCGGCCAGCCGCTCGCCGGCGATTCGCCACTGGCCTACCTGCTCGGTACCGCGCTA
CTGCTGGTCGCCATCTACCTGCTTGGCCTCGGCGTACAGCTAGGCCTGAAGCGGCCGCTGGCCAACCTGTTC
GACCTGACCCTGCGGCGTACCCCGCTGATCGGCAACCTGTACAACCTGGCCGACCGTTTCGTCGGCCTGCTG
GACAAGAAGCAGGACGCCGACATCGCCGCGATGAGTCCGGTTTGGTGTTTCTTCGGCGGCGACGGCGCCGCC
GTGCTGGCGCTGATGCCCAACCCCGAAGCGGTGGAACTGGATGGCCGCGCGCACTACGCGATCCTGGTGCCG
ACCGCGCCGATCCCGGTGGGCGGCGGCCTGCTCTACGTTCCGGTGGAATGGGTGAAACCGGCACAGATCGGC
ATGGACACCTTCACCAGCATCTATGTGTCGATGGGCATCACCCCACCACCGCCGCTGGCCGCCGCCAAGGGG
CTGGCGGAGCCGCGCGCGGAGCAGCCGCCGGCGGCTCCATAG
Translation:
MLKKSFNSLLTTWLAGLLVMLPLVLTVALLAWVVSLLNRFVGPSSLIGRGFAAIGQPLAGDSPLAYLLGTAL
LLVAIYLLGLGVQLGLKRPLANLFDLTLRRTPLIGNLYNLADRFVGLLDKKQDADIAAMSPVWCFFGGDGAA
VLALMPNPEAVELDGRAHYAILVPTAPIPVGGGLLYVPVEWVKPAQIGMDTFTSIYVSMGITPPPPLAAAKG
LAEPRAEQPPAAP*
AnnotationID:3514GeneID:3506
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 13:01:27
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA5151
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04367
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04367, DUF502, Protein of unknown function (DUF502). 
Predicted to be an integral membrane protein.
CD-Length = 155 residues, 100.0% aligned
Score =  148 bits (376), Expect = 4e-37
Identities = 53/164 (32%), Positives = 72/164 (43%), Gaps = 14/164 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7015




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24157




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34903




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3506_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3506
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5591
                           PA5151_tr
                           translation of PA5151
                           229
                           99.12
                           99.56
                           0
                           1156.0
     

     
     
156033
                           gb|AAG08536.1|AE004928_2
                           (AE004928) hypothetical protein PA5151 [Pseudomonas aeruginosa PAO1]
                           229
                           99.12
                           99.56
                           0
                           1156.0
     

     






      

          
GC ORFID: 46508How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5151Glimmer Score: 

          
Start: 5335445Stop: 5336134

          
Length: 690


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5151 translation of PA5151Homolog Bit Score 449.0

          
Other Homologs:  t_PA5151 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAAGAAAAGCTTCAACTCCCTGCTCACCACCTGGCTCGCCGGCCTGCTGGTGATGCTGCCGCTGGTA 
CTCACCGTAGCCTTGCTGGCCTGGGTGGTCAGCTTGCTGAACCGCTTCGTCGGTCCATCCAGCCTGATCGGT 
CGCGGCTTCGCCGCCATCGGCCAGCCGCTCGCCGGCGATTCGCCACTGGCCTACCTGCTCGGTACCGCGCTA 
CTGCTGGTCGCCATCTACCTGCTTGGCCTCGGCGTACAGCTAGGCCTGAAGCGGCCGCTGGCCAACCTGTTC 
GACCTGACCCTGCGGCGTACCCCGCTGATCGGCAACCTGTACAACCTGGCCGACCGTTTCGTCGGCCTGCTG 
GACAAGAAGCAGGACGCCGACATCGCCGCGATGAGTCCGGTTTGGTGTTTCTTCGGCGGCGACGGCGCCGCC 
GTGCTGGCGCTGATGCCCAACCCCGAAGCGGTGGAACTGGATGGCCGCGCGCACTACGCGATCCTGGTGCCG 
ACCGCGCCGATCCCGGTGGGCGGCGGCCTGCTCTACGTTCCGGTGGAATGGGTGAAACCGGCACAGATCGGC 
ATGGACACCTTCACCAGCATCTATGTGTCGATGGGCATCACCCCACCACCGCCGCTGGCCGCCGCCAAGGGG 
CTGGCGGAGCCGCGCGCGGAGCAGCCGCCGGCGGCTCCATAG