ViewGene

Locus Name:
GeneID:
Location:

GeneID:3504
TrivialName: PA14_56950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56950
PAO1 Ortholog Locus:PA4381
Sequence Length:684
Protein Length:227
Start: 5076376
Stop: 5075693
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07769.1|AE004854_5 (AE004854) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 227/227 (100%), Positives = 227/227 (100%)
Sequence:
ATGCGAATACTGGTGGTCGAAGACAACCGCGACATCCTGGCCAACCTGGCCGATTACCTGTCGCTCAAGGGC
TATACCGTGGATTGCGCGCAGGACGGGCTGTCCGGCCTGCACCTGGCGGCCACCGAGCACTACGACCTGATC
GTGCTCGACGTGATGCTGCCGGGAATCGACGGCTATGCCCTGTGCCGGCGCCTGCGCGAAGACGCACGGCGC
GACACCCCGGTGATCATGCTCACCGCCCGCGACCAGTTGGACGACCGCCTGCAGGGGTTTCGTTCCGGCGCC
GACGATTATCTGGTCAAGCCCTTCGCCCTTTCCGAACTTTCCGCACGCATCGAGGCGGTGCTGCGTCGCGCC
CAGGGTGGCGGCCGCCGCGAGCTGAGCGTGGCCGATCTGAGCTATGACCTGGACACCCTGGAGGTCAAGCGC
GCGGGCAAGTCGCTCAAGCTCAACCCGATCGGCCTCAAGCTGCTCGCCGTGCTGATGCAGAAGAGCCCCCAT
GTGGTGCGCCGGGATGCCCTGGAAGAAGCGGTCTGGGGCGACGACTGCCCGGACAGCGACAGCCTGCGCAGC
CACGTCCATCAACTCCGTCAGGTGATCGACAAGCCATTCTCCGTGGCCTTGCTGCATACGGTGCATGGCGTT
GGCTACCGCCTGGCGGAGGAGCCGAATGGAGTATAA
Translation:
MRILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYALCRRLREDARR
DTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRAQGGGRRELSVADLSYDLDTLEVKR
AGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVWGDDCPDSDSLRSHVHQLRQVIDKPFSVALLHTVHGV
GYRLAEEPNGV*
AnnotationID:3512GeneID:3504
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 09:09:40
Gene Name:
Confidence Code:3
GeneProduct:putative DNA-binding response regulator ColR
Cell Localization:()
Synonyms:colR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0745,cd00156,smart00448
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57824.1| (AE016871) DNA-binding response regulator ColR [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 227

 Score =  402 bits (1034), Expect = e-112
 Identities = 199/227 (87%), Positives = 212/227 (93%)


>emb|CAA70931.1| (Y09798) colR [Pseudomonas fluorescens]
          Length = 227

 Score =  395 bits (1015), Expect = e-109
 Identities = 196/227 (86%), Positives = 209/227 (92%)

Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain 
and a winged-helix DNA-binding domain.
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 100.0% aligned
Score =  207 bits (529), Expect = 1e-54
Identities = 104/230 (45%), Positives = 139/230 (60%), Gaps = 7/230 (3%)

cd00156, REC, Signal receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  118 bits (298), Expect = 9e-28
Identities = 53/114 (46%), Positives = 72/114 (63%), Gaps = 1/114 (0%)

smart00448, REC, cheY-homologous receiver domain
CD-Length = 113 residues, 100.0% aligned
Score =  115 bits (290), Expect = 8e-27
Identities = 56/114 (49%), Positives = 71/114 (62%), Gaps = 2/114 (1%)
Genomic Context:
Comment:
ReferenceID:7011
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17137
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3504_cdd.html
URL:
ReferenceID:24153
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3504

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5584 PA4381_tr translation of PA4381 227 99.99 99.99 0 1154.0
155803 gb|AAG07769.1|AE004854_5 (AE004854) probable two-component response regulator [Pseudomonas aeruginosa PAO1] 227 99.99 99.99 0 1154.0
155804 gb|AAN66526.1|AE016281_7 (AE016777) DNA-binding response regulator ColR [Pseudomonas putida KT2440] 227 88.98 94.27 0 1050.0
155805 gb|AAK39631.1| (AY032724) ColR [Pseudomonas putida] 227 88.98 94.27 0 1050.0
155806 gb|AAO57824.1| (AE016871) DNA-binding response regulator ColR [Pseudomonas syringae pv. tomato str. DC3000] 227 87.66 93.39 0 1034.0
GC ORFID: 46506How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4381Glimmer Score:
Start: 4340052Stop: 4339369
Length: 684
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4381 translation of PA4381Homolog Bit Score 449.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2057 (ORF: BLASTX 402.0), psyr_15may02_Scaffold11_revised_gene1809 (ORF: BLASTX 262.0), psyr_15may02_Scaffold2_revised_gene3222 (ORF: BLASTX 213.0), t_PA3077 (ORF: BLASTX 210.0), t_PA1437 (ORF: BLASTX 182.0), psyr_15may02_Scaffold3_revised_gene4946 (ORF: BLASTX 178.0), t_PA4885 (ORF: BLASTX 167.0), psyr_15may02_Scaffold9_revised_gene8194 (ORF: BLASTX 162.0), psyr_15may02_Scaffold8_revised_gene7577 (ORF: BLASTX 158.0), t_PA2809 (ORF: BLASTX 154.0), t_PA2523 (ORF: BLASTX 147.0), t_PA4381 (ORF: GLIMMER)
GC ORF Sequence
ATGCGAATACTGGTGGTCGAAGACAACCGCGACATCCTGGCCAACCTGGCCGATTACCTGTCGCTCAAGGGC
TATACCGTGGATTGCGCGCAGGACGGGCTGTCCGGCCTGCACCTGGCGGCCACCGAGCACTACGACCTGATC
GTGCTCGACGTGATGCTGCCGGGAATCGACGGCTATGCCCTGTGCCGGCGCCTGCGCGAAGACGCACGGCGC
GACACCCCGGTGATCATGCTCACCGCCCGCGACCAGTTGGACGACCGCCTGCAGGGGTTTCGTTCCGGCGCC
GACGATTATCTGGTCAAGCCCTTCGCCCTTTCCGAACTTTCCGCACGCATCGAGGCGGTGCTGCGTCGCGCC
CAGGGTGGCGGCCGCCGCGAGCTGAGCGTGGCCGATCTGAGCTATGACCTGGACACCCTGGAGGTCAAGCGC
GCGGGCAAGTCGCTCAAGCTCAACCCGATCGGCCTCAAGCTGCTCGCCGTGCTGATGCAGAAGAGCCCCCAT
GTGGTGCGCCGGGATGCCCTGGAAGAAGCGGTCTGGGGCGACGACTGCCCGGACAGCGACAGCCTGCGCAGC
CACGTCCATCAACTCCGTCAGGTGATCGACAAGCCATTCTCCGTGGCCTTGCTGCATACGGTGCATGGCGTT
GGCTACCGCCTGGCGGAGGAGCCGAATGGAGTATAA