ViewGene
Locus Name:
GeneID:
Location:

GeneID:3503
TrivialName: PA14_21070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21070
PAO1 Ortholog Locus:PA3322
Sequence Length:699
Protein Length:232
Start: 1822080
Stop: 1822778
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06710.1|AE004754_6 (AE004754) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 229/232 (98%), Positives = 230/232 (99%)
Sequence:
GTGCGCAACGTGCGTGCCTACCAGGACCGCGGCCTGCTGCCGCCGCCGGAGCGGCGCGGCCGGGTCGGCGTG
TATTTCGACAGCCATCTCAAGCGCCTGCGGCTGATCAACCAGTTGCTCGAACGCGGCTATTCCAGCGCCAAC
ATCAAGGAATTGCTGGAGGCCTGGGAACAGGGCCGCGACCTCGACCACGTGCTCGGCCTGGACCAGGCGATC
ATCGGCGAGTGGAACCTGGAGACGCCCGGCAGCATCGGCTTCGACGAACTCCAGGCGATCTTCGGCGACGAA
CTGAACGACCGGGTGATCGACAAGGCCCAGGCGCTGGGCCTGCTGCTGTTCGACGGCGAGTGCATGAAGATC
CCCAGTCCGCGGCTGTTCCAGGCCGGGCTGGAGCTGTACCGCAGCGGCATCCCGCTGGAGGCGTTGCTCGAT
CACCTCGGCGAGTTGCGTAGCGACACCGAGCACCTGGCGGCGGGGATCGTCCGCCTGATCGTCACCCACCTG
GTGGACGGCCGCGGCACCGACCTGCTGCCCGGGGCGCCGGACCTGCAGGAGCTGGCCAAGGTATTCCTGCGC
CTGCGTCCGCTGGCGGAACACGTGGTCCAGGTGGAACTGGCGCGCGGCCTCAAGCTGTCGGCCAACGAAATG
CTCGGCGAGCGTGTCGGCGAGATGCTGCGCAAGCTGGAAAAGCCTTCCTGA
Translation:
MRNVRAYQDRGLLPPPERRGRVGVYFDSHLKRLRLINQLLERGYSSANIKELLEAWEQGRDLDHVLGLDQAI
IGEWNLETPGSIGFDELQAIFGDELNDRVIDKAQALGLLLFDGECMKIPSPRLFQAGLELYRSGIPLEALLD
HLGELRSDTEHLAAGIVRLIVTHLVDGRGTDLLPGAPDLQELAKVFLRLRPLAEHVVQVELARGLKLSANEM
LGERVGEMLRKLEKPS*
AnnotationID:3511GeneID:3503
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:30
Gene Name:
Confidence Code:3
GeneProduct:putative MerR-family transcriptional regulator
Cell Localization:()
Synonyms:PA3322
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD16789.1| (AL646073) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 256

 Score =  183 bits (464), Expect = 8e-46
 Identities = 102/231 (44%), Positives = 144/231 (62%), Gaps = 1/231 (0%)

>dbj|BAC71966.1| (AP005038) putative MerR-family transcriptional regulator
           [Streptomyces avermitilis MA-4680]
          Length = 307

 Score =  171 bits (432), Expect = 4e-42
 Identities = 98/225 (43%), Positives = 128/225 (56%), Gaps = 3/225 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14867




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24151




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32241




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3503_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3503
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5583
                           PA3322_tr
                           translation of PA3322
                           232
                           98.70
                           99.13
                           0
                           1155.0
     

     
     
155800
                           gb|AAG06710.1|AE004754_6
                           (AE004754) hypothetical protein PA3322 [Pseudomonas aeruginosa PAO1]
                           232
                           98.27
                           99.13
                           0
                           1152.0
     

     
     
155801
                           emb|CAD16789.1|
                           (AL646073) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           257
                           40.07
                           56.03
                           26
                           468.0
     

     
     
155802
                           dbj|BAC71966.1|
                           (AP005038) putative MerR-family transcriptional regulator [Streptomyces avermitilis MA-4680]
                           312
                           33.33
                           42.94
                           85
                           441.0
     

     






      

          
GC ORFID: 46505How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3322Glimmer Score: 

          
Start: 3131852Stop: 3131154

          
Length: 699


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3322 translation of PA3322Homolog Bit Score 449.0

          
Other Homologs:  t_PA3322 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGCAACGTGCGTGCCTACCAGGACCGCGGCCTGCTGCCGCCGCCGGAGCGGCGCGGCCGGGTCGGCGTG 
TATTTCGACAGCCATCTCAAGCGCCTGCGGCTGATCAACCAGTTGCTCGAACGCGGCTATTCCAGCGCCAAC 
ATCAAGGAATTGCTGGAGGCCTGGGAACAGGGCCGCGACCTCGACCACGTGCTCGGCCTGGACCAGGCGATC 
ATCGGCGAGTGGAACCTGGAGACGCCCGGCAGCATCGGCTTCGACGAACTCCAGGCGATCTTCGGCGACGAA 
CTGAACGACCGGGTGATCGACAAGGCCCAGGCGCTGGGCCTGCTGCTGTTCGACGGCGAGTGCATGAAGATC 
CCCAGTCCGCGGCTGTTCCAGGCCGGGCTGGAGCTGTACCGCAGCGGCATCCCGCTGGAGGCGTTGCTCGAT 
CACCTCGGCGAGTTGCGTAGCGACACCGAGCACCTGGCGGCGGGGATCGTCCGCCTGATCGTCACCCACCTG 
GTGGACGGCCGCGGCACCGACCTGCTGCCCGGGGCGCCGGACCTGCAGGAGCTGGCCAAGGTATTCCTGCGC 
CTGCGTCCGCTGGCGGAACACGTGGTCCAGGTGGAACTGGCGCGCGGCCTCAAGCTGTCGGCCAACGAAATG 
CTCGGCGAGCGTGTCGGCGAGATGCTGCGCAAGCTGGAAAAGCCTTCCTGA