ViewGene
Locus Name:
GeneID:
Location:

GeneID:3502
TrivialName: PA14_51670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51670
PAO1 Ortholog Locus:PA0976
Sequence Length:675
Protein Length:224
Start: 4591912
Stop: 4591238
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82946.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 224/224 (100%), Positives = 224/224 (100%)
Sequence:
ATGAACCAGAAGAAAGCGGTCATCCTGCTCTCCGGCGGCCTCGACTCCGCCACCGTTGTCGCCATGGCCAAG
GCCGACGGCTACGCCTGCTACACCATGAGTTTCGACTACGGCCAGCGCCATCGCGCCGAGCTGCAGGCCGCC
GAGCGCGTGGCCCGGCAGTTGGGCGTGATCGAGCACAAGGTGATAGGGCTCGACCTCAATGGCATGGGCGGC
TCGGCATTGACCGACGAGAGCATCGCGGTGCCCGAGTCGCCTAGCGAAGGTATACCGGTGACTTACGTGCCC
GCGCGCAATACGGTGTTTCTCTCGCTCGCCCTGGGCTGGGCCGAGGTCCTGGATGCCCGTGACATCTTCATC
GGTGTGAATGCGGTGGATTACTCTGGTTATCCGGATTGTCGCCCTGAGTTCGTCGAGGCTTTCGAGCGCATG
GCGAACCTGGCAACCAAGGCGGGCGTGGAAGGCAATGGCTTCCGCATCCAGGCGCCGCTGCAGTATCTGTCC
AAGGCGCAGATCATCCAGGCGGGCGTGGCGCGTGGGGTGGATTACGGCCTGACGGTGTCCTGTTATCAAGCC
GATGAGCAGGGGCGTGCGTGCGGCAAATGCGATAGCTGCCGGCTGCGTGCGGATGGCTTCGCGGCGGCTGGT
ATTTCCGACCCGACGCCATATTTCTGA
Translation:
MNQKKAVILLSGGLDSATVVAMAKADGYACYTMSFDYGQRHRAELQAAERVARQLGVIEHKVIGLDLNGMGG
SALTDESIAVPESPSEGIPVTYVPARNTVFLSLALGWAEVLDARDIFIGVNAVDYSGYPDCRPEFVEAFERM
ANLATKAGVEGNGFRIQAPLQYLSKAQIIQAGVARGVDYGLTVSCYQADEQGRACGKCDSCRLRADGFAAAG
ISDPTPYF*
AnnotationID:3510GeneID:3502
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 13:01:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0976
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0603
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0603, Predicted PP-loop superfamily ATPase [General function prediction only]
        CD-Length = 222 residues,  98.6% aligned
        Score =  279 bits (714), Expect = 2e-76






   
Genomic Context:






   
Comment:


















    ReferenceID:7007




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24149




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3502
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5582
                           PA0976_tr
                           translation of PA0976
                           224
                           99.99
                           99.99
                           0
                           1155.0
     

     
     
155766
                           gb|AAP82946.1|
                           (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
                           224
                           99.99
                           99.99
                           0
                           1155.0
     

     
     
155767
                           gb|AAG04365.1|AE004531_2
                           (AE004531) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           224
                           99.99
                           99.99
                           0
                           1155.0
     

     
     
155768
                           gb|AAN66850.1|AE016313_9
                           (AE016778) exsB protein [Pseudomonas putida KT2440]
                           224
                           87.50
                           93.75
                           0
                           1030.0
     

     
     
155769
                           emb|CAB50783.1|
                           (X74218) hypothetical protein [Pseudomonas putida]
                           224
                           87.50
                           93.75
                           0
                           1030.0
     

     






      

          
GC ORFID: 46504How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0976Glimmer Score: 

          
Start: 361995Stop: 362669

          
Length: 675


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0976 translation of PA0976Homolog Bit Score 449.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4697 (ORF: BLASTX 389.0), t_PA0976 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCAGAAGAAAGCGGTCATCCTGCTCTCCGGCGGCCTCGACTCCGCCACCGTTGTCGCCATGGCCAAG 
GCCGACGGCTACGCCTGCTACACCATGAGTTTCGACTACGGCCAGCGCCATCGCGCCGAGCTGCAGGCCGCC 
GAGCGCGTGGCCCGGCAGTTGGGCGTGATCGAGCACAAGGTGATAGGGCTCGACCTCAATGGCATGGGCGGC 
TCGGCATTGACCGACGAGAGCATCGCGGTGCCCGAGTCGCCTAGCGAAGGTATACCGGTGACTTACGTGCCC 
GCGCGCAATACGGTGTTTCTCTCGCTCGCCCTGGGCTGGGCCGAGGTCCTGGATGCCCGTGACATCTTCATC 
GGTGTGAATGCGGTGGATTACTCTGGTTATCCGGATTGTCGCCCTGAGTTCGTCGAGGCTTTCGAGCGCATG 
GCGAACCTGGCAACCAAGGCGGGCGTGGAAGGCAATGGCTTCCGCATCCAGGCGCCGCTGCAGTATCTGTCC 
AAGGCGCAGATCATCCAGGCGGGCGTGGCGCGTGGGGTGGATTACGGCCTGACGGTGTCCTGTTATCAAGCC 
GATGAGCAGGGGCGTGCGTGCGGCAAATGCGATAGCTGCCGGCTGCGTGCGGATGGCTTCGCGGCGGCTGGT 
ATTTCCGACCCGACGCCATATTTCTGA