ViewGene

Locus Name:
GeneID:
Location:

GeneID:3500
TrivialName: PA14_63520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63520
PAO1 Ortholog Locus:PA4806
Sequence Length:684
Protein Length:227
Start: 5662476
Stop: 5663159
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08192.1|AE004893_10 (AE004893) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 225/227 (99%), Positives = 226/227 (99%)
Sequence:
ATGATCAGCCTGGAACGCAAGGGCCACGCGCCCACCCTGCTCTACGAGCGCGGCATCGCCGAGCGCTTCCGC
GAGGCGATCATCCGCCGCTACTTCTCCCGCGGCTACCTGCTCGACCCTTTCTGCCTGGCGGTGGAGGAAGGC
CTTCCGGAAGGCTTCTACACCCTCGGCGAGATCGCCCCCGACGACTTCTTCCAGAGCGCCTACTACCAGACC
TACTACCTCGGCGCCGGAGCGGTGGAGGACGTCTACTACATCCTCGACCTCGGCCCCACCGAGAAGCTCTCG
ATCTGTCTCTACAACGGCCTTTCGGCGAGCCGCTACAGCGACGCCCAGGTCGCCGCCCTCGCCGGCCTGGCG
CCGCCGGTGCTGGAGCTGGCCCGGCAGTTCTGCGCCGGCCGCGCCAACCTCTCGCCGAACCCGCAGGCCGAC
CTCGCCCCGCGCCTTCAGGAAGTGCTGCGCGGCTTCGGTCGCGGCGTGCTCACCGACCGCGAACGCGAGGCC
TGCCACCTGCTGCTCAGCGGCCACTCGGCGAAATCCAGCGCGCGGCTGATGGACATCTCCCCGGAGACCGTG
CGCATGCACCGGAAGAATCTCTACACCAAGCTGGAAGTCGGCTCGCAGTCGGAACTGTTCGCGCTGTTCATC
GAGTGCCTGAGCCAGGGGCAGCGCGTCGCCCCCTGA
Translation:
MISLERKGHAPTLLYERGIAERFREAIIRRYFSRGYLLDPFCLAVEEGLPEGFYTLGEIAPDDFFQSAYYQT
YYLGAGAVEDVYYILDLGPTEKLSICLYNGLSASRYSDAQVAALAGLAPPVLELARQFCAGRANLSPNPQAD
LAPRLQEVLRGFGRGVLTDREREACHLLLSGHSAKSSARLMDISPETVRMHRKNLYTKLEVGSQSELFALFI
ECLSQGQRVAP*
AnnotationID:3508GeneID:3500
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:17
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4806
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2771,pfam00196,smart00421
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69314.1|AE016568_9 (AE016788) transcriptional regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 299

 Score =  239 bits (609), Expect = 1e-62
 Identities = 126/219 (57%), Positives = 149/219 (68%), Gaps = 2/219 (0%)

Structural Features:
COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]
CD-Length = 65 residues,  92.3% aligned
Score = 61.6 bits (149), Expect = 7e-11
Identities = 27/60 (45%), Positives = 36/60 (60%)

pfam00196, GerE, Bacterial regulatory proteins, luxR family.
CD-Length = 58 residues,  96.6% aligned
Score = 58.3 bits (141), Expect = 7e-10
Identities = 25/56 (44%), Positives = 34/56 (60%)

smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
CD-Length = 58 residues,  93.1% aligned
Score = 57.8 bits (140), Expect = 9e-10
Identities = 23/54 (42%), Positives = 31/54 (57%)
Genomic Context:
Comment:
ReferenceID:7003
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24145
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35227
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3500_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3500

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5580 PA4806_tr translation of PA4806 227 99.11 99.55 0 1158.0
155747 gb|AAG08192.1|AE004893_10 (AE004893) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 227 99.11 99.55 0 1158.0
155748 gb|AAN69314.1|AE016568_9 (AE016788) transcriptional regulator, LuxR family [Pseudomonas putida KT2440] 302 42.05 50.33 78 606.0
GC ORFID: 46502How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4806Glimmer Score:
Start: 4926156Stop: 4926839
Length: 684
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4806 translation of PA4806Homolog Bit Score 450.0
Other Homologs: t_PA4806 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAGCCTGGAACGCAAGGGCCACGCGCCCACCCTGCTCTACGAGCGCGGCATCGCCGAGCGCTTCCGC
GAGGCGATCATCCGCCGCTACTTCTCCCGCGGCTACCTGCTCGACCCTTTCTGCCTGGCGGTGGAGGAAGGC
CTTCCGGAAGGCTTCTACACCCTCGGCGAGATCGCCCCCGACGACTTCTTCCAGAGCGCCTACTACCAGACC
TACTACCTCGGCGCCGGAGCGGTGGAGGACGTCTACTACATCCTCGACCTCGGCCCCACCGAGAAGCTCTCG
ATCTGTCTCTACAACGGCCTTTCGGCGAGCCGCTACAGCGACGCCCAGGTCGCCGCCCTCGCCGGCCTGGCG
CCGCCGGTGCTGGAGCTGGCCCGGCAGTTCTGCGCCGGCCGCGCCAACCTCTCGCCGAACCCGCAGGCCGAC
CTCGCCCCGCGCCTTCAGGAAGTGCTGCGCGGCTTCGGTCGCGGCGTGCTCACCGACCGCGAACGCGAGGCC
TGCCACCTGCTGCTCAGCGGCCACTCGGCGAAATCCAGCGCGCGGCTGATGGACATCTCCCCGGAGACCGTG
CGCATGCACCGGAAGAATCTCTACACCAAGCTGGAAGTCGGCTCGCAGTCGGAACTGTTCGCGCTGTTCATC
GAGTGCCTGAGCCAGGGGCAGCGCGTCGCCCCCTGA