ViewGene

Locus Name:
GeneID:
Location:

GeneID:350
TrivialName: PA14_38860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38860
PAO1 Ortholog Locus:PA1982
Sequence Length:1872
Protein Length:623
Start: 3465040
Stop: 3466911
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05370.1|AE004624_9 (AE004624) quinoprotein alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 621/623 (99%), Positives = 623/623 (100%)
Sequence:
ATGACAACAAGAACCTCACCCGCCCCTGCCGGCCTCCTGCGCCCGAGCCTGCACTGCCTCGCCTTCGCCGTC
GCCCTGGGCAGCGCTGGCGCCGCGCTGGCCAAGGATGTGACCTGGGAGGACATCGCCAACGACGACAAGACC
ACCGGCGACGTGCTGCAGTACGGCATGGGCACCCACGCCCAGCGCTGGAGCCCGCTCAAGCAGGTCAACGCC
GACAACGTGTTCAAGCTGACCCCGGCCTGGTCGTACTCCTTCGGCGACGAGAAACAGCGCGGCCAGGAGTCC
CAGGCCATCGTCAGCGACGGCGTGATCTACGTGACCGCCTCCTACTCGCGGCTGTTCGCCCTCGACGCGAAG
ACCGGCAAGCGCCTGTGGACCTACAACCACCGCCTGCCCGACGACATCCGCCCGTGCTGCGACGTGGTCAAC
CGCGGCGCCGCGATCTATGGCGACAAGGTGTTCTTCGGCACCCTCGACGCCTCGGTGGTGGCGCTGAACAAG
AACACCGGCAAGGTGGTGTGGAAGAAGAAGTTCGCCGATCACGGCGCCGGCTACACCATGACTGGCGCGCCG
ACCATCGTGAAGGACGGCAAGACCGGCAAGGTCCTGCTGATCCACGGCAGTTCGGGCGACGAGTTCGGCGTG
GTCGGCCGCCTGTTCGCCCGCGATCCGGATACCGGCGAGGAAATCTGGATGCGTCCCTTCGTCGAAGGCCAC
ATGGGCCGCCTGAACGGCAAGGACAGCACGGTGACCGGCGACGTCAAGGCGCCCTCCTGGCCGGACGATCGC
AACTCGCCGACCGGCAAGGTCGAGTCTTGGAGCCACGGCGGCGGCGCTCCCTGGCAGAGCGCCAGCTTCGAC
GCCGAGACCAACACCATCATCGTCGGCGCCGGCAACCCCGGCCCGTGGAACACCTGGGCGCGCACCGCCAAG
GGCGGCAACCCGCACGACTACGACAGCCTCTACACCTCCGGCCAGGTCGGAGTGGACCCGAGCAGCGGCGAG
GTGAAGTGGTTCTACCAGCACACCCCCAACGACGCCTGGGACTTCTCCGGCAACAACGAACTGGTGCTGTTC
GACTACAAGGCCAAGGACGGCAAGATCGTCAAGGCCACCGCCCACGCCGACCGCAACGGCTTCTTCTATGTG
GTCGACCGCAGCAACGGCAAGTTGCAGAACGCTTTCCCCTTCGTCGACAACATCACCTGGGCCAGCCACATC
GACCTGAAGACCGGCCGCCCGGTGGAGCGCGAGGGCCAGCGCCCGCCGCTGCCGGAACCGGGGCAGAAGCAT
GGCAAGGCGGTGGAAGTATCGCCGCCGTTCCTCGGCGGCAAGAACTGGAACCCGATGGCCTACAGCCAGGAC
ACCGGCCTGTTCTACGTGCCGGCCAACCACTGGAAGGAAGACTACTGGACCGAGGAGGTCAGCTATACGAAG
GGCAGCGCCTACCTGGGCATGGGCTTCCGGATCAAGCGCATGTACGACGACCACGTCGGCAGCCTGCGCGCC
ATGGACCCGCTCAGCGGCAAGCTGGTCTGGGAACACAAGGAACACCTGCCGCTCTGGGCCGGGGTGCTGGCC
ACCGCCGGCAACCTGGTGTTCACCGGCACCGGCGACGGCTACTTCAAGGCCTTCGACGCGAAGAGCGGCAAG
GAGCTGTGGAAATTCCAGACCGGCAGCGGCATCGTCTCGCCACCGATCACCTGGGAACAGGACGGCGAGCAG
TACCTCGGCGTGACCGTCGGCTACGGCGGCGCCGTGCCGCTGTGGGGCGGCGACATGGCCGACCTGACCCGG
CCGGTGGCCCAGGGCGGTTCCTTCTGGGTATTCAAGCTGCCCAGCTGGGACAACCGCACCGCCAGCCGCTGA
Translation:
MTTRTSPAPAGLLRPSLHCLAFAVALGSAGAALAKDVTWEDIANDDKTTGDVLQYGMGTHAQRWSPLKQVNA
DNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVN
RGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGV
VGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFD
AETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLF
DYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKH
GKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRA
MDPLSGKLVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ
YLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVFKLPSWDNRTASR*
AnnotationID:359GeneID:350
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 16:04:39
Gene Name:exaA
Confidence Code:1
GeneProduct:PQQ-linked alcohol dehydrogenase
Cell Localization:()
Synonyms:qedH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:quinoprotein ethanol dehydrogenase
Functional Category Confidence Code:5
COGs:COG4993,cd00216
Secondary Functional Category(ies):biosynthesis of cofactors, prosthetic groups and carriers
EC Number:1.1.99.-
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68282.1|AE016462_8 (AE016784) quinoprotein ethanol dehydrogenase [Pseudomonas putida
           KT2440]
          Length = 631

 Score = 1131 bits (2925), Expect = 0.0
 Identities = 529/631 (83%), Positives = 572/631 (90%), Gaps = 8/631 (1%)

Structural Features:
COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and metabolism]
CD-Length = 773 residues,  87.1% aligned
Score =  633 bits (1633), Expect = 0.0
Identities = 220/695 (31%), Positives = 281/695 (40%), Gaps = 94/695 (13%)

cd00216, PQQ_DH, Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, 
like ethanol, methanol, and membrane bound glucose dehydrogenases.
CD-Length = 530 residues, 100.0% aligned
Score =  550 bits (1418), Expect = 2e-157
Identities = 265/588 (45%), Positives = 321/588 (54%), Gaps = 72/588 (12%)
Genomic Context:
Comment:
ReferenceID:703
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17845
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32744
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:350_cdd.html
URL:
ReferenceID:34365
Author/Investigator(s): Gorisch H.
Title: The ethanol oxidation system and its regulation in Pseudomonas aeruginosa.
PubMed: 12686116
MedLine:
Source:
Biochim Biophys Acta. 2003 Apr 11;1647(1-2):98-102.
Reference Type:Journal
Data:
URL:ttp://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12686116
ReferenceID:34366
Author/Investigator(s): Schobert M, Gorisch H.
Title: Cytochrome c550 is an essential component of the quinoprotein ethanol oxidation system in Pseudomonas aeruginosa: cloning and sequencing of the genes encoding cytochrome c550 and an adjacent acetaldehyde dehydrogenase.
PubMed: 10075429
MedLine:
Source:
Microbiology. 1999 Feb;145 ( Pt 2):471-81.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10075429
Homologs By Global Alignment
Gene ID:350

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
583 PA1982_tr translation of PA1982 623 99.67 99.99 0 3403.0
28003 gb|AAG05370.1|AE004624_9 (AE004624) quinoprotein alcohol dehydrogenase [Pseudomonas aeruginosa PAO1] 623 99.67 99.99 0 3403.0
28004 emb|CAA08896.1| (AJ009858) quinoprotein ethanol dehydrogenase [Pseudomonas aeruginosa] 623 99.67 99.99 0 3403.0
28005 gb|AAN68282.1|AE016462_8 (AE016784) quinoprotein ethanol dehydrogenase [Pseudomonas putida KT2440] 631 83.83 90.64 8 2932.0
28006 gb|AAL12228.1| (AY048591) PQQ-linked alcohol dehydrogenase [Pseudomonas putida] 631 83.67 90.33 8 2909.0
GC ORFID: 43352How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1982Glimmer Score:
Start: 1488871Stop: 1487000
Length: 1872
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1982 translation of PA1982Homolog Bit Score 1315.0
Other Homologs: t_PA1982 (ORF: GLIMMER)
GC ORF Sequence
ATGACAACAAGAACCTCACCCGCCCCTGCCGGCCTCCTGCGCCCGAGCCTGCACTGCCTCGCCTTCGCCGTC
GCCCTGGGCAGCGCTGGCGCCGCGCTGGCCAAGGATGTGACCTGGGAGGACATCGCCAACGACGACAAGACC
ACCGGCGACGTGCTGCAGTACGGCATGGGCACCCACGCCCAGCGCTGGAGCCCGCTCAAGCAGGTCAACGCC
GACAACGTGTTCAAGCTGACCCCGGCCTGGTCGTACTCCTTCGGCGACGAGAAACAGCGCGGCCAGGAGTCC
CAGGCCATCGTCAGCGACGGCGTGATCTACGTGACCGCCTCCTACTCGCGGCTGTTCGCCCTCGACGCGAAG
ACCGGCAAGCGCCTGTGGACCTACAACCACCGCCTGCCCGACGACATCCGCCCGTGCTGCGACGTGGTCAAC
CGCGGCGCCGCGATCTATGGCGACAAGGTGTTCTTCGGCACCCTCGACGCCTCGGTGGTGGCGCTGAACAAG
AACACCGGCAAGGTGGTGTGGAAGAAGAAGTTCGCCGATCACGGCGCCGGCTACACCATGACTGGCGCGCCG
ACCATCGTGAAGGACGGCAAGACCGGCAAGGTCCTGCTGATCCACGGCAGTTCGGGCGACGAGTTCGGCGTG
GTCGGCCGCCTGTTCGCCCGCGATCCGGATACCGGCGAGGAAATCTGGATGCGTCCCTTCGTCGAAGGCCAC
ATGGGCCGCCTGAACGGCAAGGACAGCACGGTGACCGGCGACGTCAAGGCGCCCTCCTGGCCGGACGATCGC
AACTCGCCGACCGGCAAGGTCGAGTCTTGGAGCCACGGCGGCGGCGCTCCCTGGCAGAGCGCCAGCTTCGAC
GCCGAGACCAACACCATCATCGTCGGCGCCGGCAACCCCGGCCCGTGGAACACCTGGGCGCGCACCGCCAAG
GGCGGCAACCCGCACGACTACGACAGCCTCTACACCTCCGGCCAGGTCGGAGTGGACCCGAGCAGCGGCGAG
GTGAAGTGGTTCTACCAGCACACCCCCAACGACGCCTGGGACTTCTCCGGCAACAACGAACTGGTGCTGTTC
GACTACAAGGCCAAGGACGGCAAGATCGTCAAGGCCACCGCCCACGCCGACCGCAACGGCTTCTTCTATGTG
GTCGACCGCAGCAACGGCAAGTTGCAGAACGCTTTCCCCTTCGTCGACAACATCACCTGGGCCAGCCACATC
GACCTGAAGACCGGCCGCCCGGTGGAGCGCGAGGGCCAGCGCCCGCCGCTGCCGGAACCGGGGCAGAAGCAT
GGCAAGGCGGTGGAAGTATCGCCGCCGTTCCTCGGCGGCAAGAACTGGAACCCGATGGCCTACAGCCAGGAC
ACCGGCCTGTTCTACGTGCCGGCCAACCACTGGAAGGAAGACTACTGGACCGAGGAGGTCAGCTATACGAAG
GGCAGCGCCTACCTGGGCATGGGCTTCCGGATCAAGCGCATGTACGACGACCACGTCGGCAGCCTGCGCGCC
ATGGACCCGCTCAGCGGCAAGCTGGTCTGGGAACACAAGGAACACCTGCCGCTCTGGGCCGGGGTGCTGGCC
ACCGCCGGCAACCTGGTGTTCACCGGCACCGGCGACGGCTACTTCAAGGCCTTCGACGCGAAGAGCGGCAAG
GAGCTGTGGAAATTCCAGACCGGCAGCGGCATCGTCTCGCCACCGATCACCTGGGAACAGGACGGCGAGCAG
TACCTCGGCGTGACCGTCGGCTACGGCGGCGCCGTGCCGCTGTGGGGCGGCGACATGGCCGACCTGACCCGG
CCGGTGGCCCAGGGCGGTTCCTTCTGGGTATTCAAGCTGCCCAGCTGGGACAACCGCACCGCCAGCCGCTGA